Critical assessment of methods of protein structure prediction (CASP)—Round XIII

A Kryshtafovych, T Schwede, M Topf… - Proteins: Structure …, 2019 - Wiley Online Library
CASP (critical assessment of structure prediction) assesses the state of the art in modeling
protein structure from amino acid sequence. The most recent experiment (CASP13 held in …

A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction

J Moult - Current opinion in structural biology, 2005 - Elsevier
For the past ten years, CASP (Critical Assessment of Structure Prediction) has monitored the
state of the art in modeling protein structure from sequence. During this period, there has …

Learning from protein structure with geometric vector perceptrons

B Jing, S Eismann, P Suriana… - International …, 2020 - openreview.net
Learning on 3D structures of large biomolecules is emerging as a distinct area in machine
learning, but there has yet to emerge a unifying network architecture that simultaneously …

Critical assessment of methods of protein structure prediction (CASP)—Round XIV

A Kryshtafovych, T Schwede, M Topf… - Proteins: Structure …, 2021 - Wiley Online Library
Critical assessment of structure prediction (CASP) is a community experiment to advance
methods of computing three‐dimensional protein structure from amino acid sequence. Core …

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests

V Mariani, M Biasini, A Barbato, T Schwede - Bioinformatics, 2013 - academic.oup.com
Motivation: The assessment of protein structure prediction techniques requires objective
criteria to measure the similarity between a computational model and the experimentally …

Methods of protein structure comparison

I Kufareva, R Abagyan - Homology modeling: Methods and protocols, 2012 - Springer
Despite its apparent simplicity, the problem of quantifying the differences between two
structures of the same protein or complex is nontrivial and continues evolving. In this …

LGA: a method for finding 3D similarities in protein structures

A Zemla - Nucleic acids research, 2003 - academic.oup.com
We present the LGA (Local-Global Alignment) method, designed to facilitate the comparison
of protein structures or fragments of protein structures in sequence dependent and …

[图书][B] Introduction to proteins: structure, function, and motion

A Kessel, N Ben-Tal - 2018 - taylorfrancis.com
Introduction to Proteins provides a comprehensive and state-of-the-art introduction to the
structure, function, and motion of proteins for students, faculty, and researchers at all levels …

[HTML][HTML] Homology modeling a fast tool for drug discovery: current perspectives

VK Vyas, RD Ukawala, M Ghate… - Indian journal of …, 2012 - ncbi.nlm.nih.gov
Major goal of structural biology involve formation of protein-ligand complexes; in which the
protein molecules act energetically in the course of binding. Therefore, perceptive of protein …

Critical assessment of methods of protein structure prediction: Progress and new directions in round XI

J Moult, K Fidelis, A Kryshtafovych… - Proteins: Structure …, 2016 - Wiley Online Library
Modeling of protein structure from amino acid sequence now plays a major role in structural
biology. Here we report new developments and progress from the CASP11 community …