Current techniques to study beneficial plant-microbe interactions

E Gamalero, E Bona, BR Glick - Microorganisms, 2022 - mdpi.com
Many different experimental approaches have been applied to elaborate and study the
beneficial interactions between soil bacteria and plants. Some of these methods focus on …

The zoonotic pathogen Wohlfahrtiimonas chitiniclastica – current findings from a clinical and genomic perspective

A Kopf, B Bunk, T Riedel, P Schröttner - BMC microbiology, 2024 - Springer
The zoonotic pathogen Wohlfahrtiimonas chitiniclastica can cause several diseases in
humans, including sepsis and bacteremia. Although the pathogenesis is not fully …

Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity

JC Hyun, JM Monk, BO Palsson - BMC genomics, 2022 - Springer
Background With the exponential growth of publicly available genome sequences,
pangenome analyses have provided increasingly complete pictures of genetic diversity for …

Identification of potential novel therapeutic drug target against Elizabethkingia anophelis by integrative pan and subtractive genomic analysis: An in silico approach

P Sarker, A Mitro, H Hoque, MN Hasan… - Computers in Biology …, 2023 - Elsevier
Elizabethkingia anophelis is a human pathogen responsible for severe nosocomial
infections in neonates and immunocompromised patients. The significantly higher mortality …

Insights into early evolutionary adaptations of the Akkermansia genus to the vertebrate gut

D González, M Morales-Olavarria… - Frontiers in …, 2023 - frontiersin.org
Akkermansia, a relevant mucin degrader from the vertebrate gut microbiota, is a member of
the deeply branched Verrucomicrobiota, as well as the only known member of this phylum to …

To kill or to be killed: pangenome analysis of Escherichia coli strains reveals a tailocin specific for pandemic ST131

E Tantoso, B Eisenhaber, M Kirsch, V Shitov, Z Zhao… - Bmc Biology, 2022 - Springer
Background Escherichia coli (E. coli) has been one of the most studied model organisms in
the history of life sciences. Initially thought just to be commensal bacteria, E. coli has shown …

Biosynthetic gene cluster profiling from North Java Sea Virgibacillus salarius reveals hidden potential metabolites

OK Radjasa, R Steven, Z Humaira, FM Dwivany… - Scientific Reports, 2023 - nature.com
Abstract Virgibacillus salarius 19. PP. SC1. 6 is a coral symbiont isolated from Indonesia's
North Java Sea; it has the ability to produce secondary metabolites that provide survival …

The genomic basis of the Streptococcus thermophilus health-promoting properties

E Roux, A Nicolas, F Valence, G Siekaniec, V Chuat… - BMC genomics, 2022 - Springer
Background Streptococcus thermophilus is a Gram-positive bacterium widely used as starter
in the dairy industry as well as in many traditional fermented products. In addition to its …

Characterization and Identification of Probiotic Features in Lacticaseibacillus Paracasei Using a Comparative Genomic Analysis Approach

A Torres-Miranda, F Melis-Arcos, D Garrido - Probiotics and Antimicrobial …, 2022 - Springer
Lacticaseibacillus paracasei species are widely used for their health-promoting properties in
food and agricultural applications. These bacteria have been isolated from various habitats …

Integration of text mining and biological network analysis: Identification of essential genes in sulfate-reducing bacteria

P Saxena, S Rauniyar, P Thakur, RN Singh… - Frontiers in …, 2023 - frontiersin.org
The growth and survival of an organism in a particular environment is highly depends on the
certain indispensable genes, termed as essential genes. Sulfate-reducing bacteria (SRB) …