[HTML][HTML] Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes
P Michalak - Genomics, 2008 - Elsevier
Accumulating evidence indicates that gene order in eukaryotic genomes is not completely
random and that genes with similar expression levels tend to be clustered within the same …
random and that genes with similar expression levels tend to be clustered within the same …
Local regulation of gene expression by lncRNA promoters, transcription and splicing
Mammalian genomes are pervasively transcribed, to produce thousands of long non-coding
RNAs (lncRNAs),. A few of these lncRNAs have been shown to recruit regulatory complexes …
RNAs (lncRNAs),. A few of these lncRNAs have been shown to recruit regulatory complexes …
[HTML][HTML] The bovine lactation genome: insights into the evolution of mammalian milk
Abstract Background The newly assembled Bos taurus genome sequence enables the
linkage of bovine milk and lactation data with other mammalian genomes. Results Using …
linkage of bovine milk and lactation data with other mammalian genomes. Results Using …
Cellular control of protein levels: A systems biology perspective
V Munro, V Kelly, CB Messner, G Kustatscher - Proteomics, 2024 - Wiley Online Library
How cells regulate protein levels is a central question of biology. Over the past decades,
molecular biology research has provided profound insights into the mechanisms and the …
molecular biology research has provided profound insights into the mechanisms and the …
Regulation of CCL2 expression in human vascular endothelial cells by a neighboring divergently transcribed long noncoding RNA
N Khyzha, M Khor, PV DiStefano… - Proceedings of the …, 2019 - National Acad Sciences
Atherosclerosis is a chronic inflammatory disease that is driven, in part, by activation of
vascular endothelial cells (ECs). In response to inflammatory stimuli, the nuclear factor …
vascular endothelial cells (ECs). In response to inflammatory stimuli, the nuclear factor …
Neighboring genes show correlated evolution in gene expression
AT Ghanbarian, LD Hurst - Molecular biology and evolution, 2015 - academic.oup.com
When considering the evolution of a gene's expression profile, we commonly assume that
this is unaffected by its genomic neighborhood. This is, however, in contrast to what we …
this is unaffected by its genomic neighborhood. This is, however, in contrast to what we …
[HTML][HTML] TGFβ promotes widespread enhancer chromatin opening and operates on genomic regulatory domains
JA Guerrero-Martínez, M Ceballos-Chávez… - Nature …, 2020 - nature.com
Abstract The Transforming Growth Factor-β (TGFβ) signaling pathway controls transcription
by regulating enhancer activity. How TGFβ-regulated enhancers are selected and what …
by regulating enhancer activity. How TGFβ-regulated enhancers are selected and what …
Co-regulation of paralog genes in the three-dimensional chromatin architecture
J Ibn-Salem, EM Muro… - Nucleic acids …, 2017 - academic.oup.com
Paralog genes arise from gene duplication events during evolution, which often lead to
similar proteins that cooperate in common pathways and in protein complexes …
similar proteins that cooperate in common pathways and in protein complexes …
Pervasive coexpression of spatially proximal genes is buffered at the protein level
G Kustatscher, P Grabowski… - Molecular systems …, 2017 - embopress.org
Genes are not randomly distributed in the genome. In humans, 10% of protein‐coding genes
are transcribed from bidirectional promoters and many more are organised in larger clusters …
are transcribed from bidirectional promoters and many more are organised in larger clusters …
[HTML][HTML] Analysis of a set of KDM5C regulatory genes mutated in neurodevelopmental disorders identifies temporal coexpression brain signatures
L Poeta, A Padula, MB Lioi, H van Bokhoven… - Genes, 2021 - mdpi.com
Dysregulation of transcriptional pathways is observed in multiple forms of
neurodevelopmental disorders (NDDs), such as intellectual disability (ID), epilepsy and …
neurodevelopmental disorders (NDDs), such as intellectual disability (ID), epilepsy and …