[HTML][HTML] Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes

P Michalak - Genomics, 2008 - Elsevier
Accumulating evidence indicates that gene order in eukaryotic genomes is not completely
random and that genes with similar expression levels tend to be clustered within the same …

Local regulation of gene expression by lncRNA promoters, transcription and splicing

JM Engreitz, JE Haines, EM Perez, G Munson, J Chen… - Nature, 2016 - nature.com
Mammalian genomes are pervasively transcribed, to produce thousands of long non-coding
RNAs (lncRNAs),. A few of these lncRNAs have been shown to recruit regulatory complexes …

[HTML][HTML] The bovine lactation genome: insights into the evolution of mammalian milk

DG Lemay, DJ Lynn, WF Martin, MC Neville, TM Casey… - Genome biology, 2009 - Springer
Abstract Background The newly assembled Bos taurus genome sequence enables the
linkage of bovine milk and lactation data with other mammalian genomes. Results Using …

Cellular control of protein levels: A systems biology perspective

V Munro, V Kelly, CB Messner, G Kustatscher - Proteomics, 2024 - Wiley Online Library
How cells regulate protein levels is a central question of biology. Over the past decades,
molecular biology research has provided profound insights into the mechanisms and the …

Regulation of CCL2 expression in human vascular endothelial cells by a neighboring divergently transcribed long noncoding RNA

N Khyzha, M Khor, PV DiStefano… - Proceedings of the …, 2019 - National Acad Sciences
Atherosclerosis is a chronic inflammatory disease that is driven, in part, by activation of
vascular endothelial cells (ECs). In response to inflammatory stimuli, the nuclear factor …

Neighboring genes show correlated evolution in gene expression

AT Ghanbarian, LD Hurst - Molecular biology and evolution, 2015 - academic.oup.com
When considering the evolution of a gene's expression profile, we commonly assume that
this is unaffected by its genomic neighborhood. This is, however, in contrast to what we …

[HTML][HTML] TGFβ promotes widespread enhancer chromatin opening and operates on genomic regulatory domains

JA Guerrero-Martínez, M Ceballos-Chávez… - Nature …, 2020 - nature.com
Abstract The Transforming Growth Factor-β (TGFβ) signaling pathway controls transcription
by regulating enhancer activity. How TGFβ-regulated enhancers are selected and what …

Co-regulation of paralog genes in the three-dimensional chromatin architecture

J Ibn-Salem, EM Muro… - Nucleic acids …, 2017 - academic.oup.com
Paralog genes arise from gene duplication events during evolution, which often lead to
similar proteins that cooperate in common pathways and in protein complexes …

Pervasive coexpression of spatially proximal genes is buffered at the protein level

G Kustatscher, P Grabowski… - Molecular systems …, 2017 - embopress.org
Genes are not randomly distributed in the genome. In humans, 10% of protein‐coding genes
are transcribed from bidirectional promoters and many more are organised in larger clusters …

[HTML][HTML] Analysis of a set of KDM5C regulatory genes mutated in neurodevelopmental disorders identifies temporal coexpression brain signatures

L Poeta, A Padula, MB Lioi, H van Bokhoven… - Genes, 2021 - mdpi.com
Dysregulation of transcriptional pathways is observed in multiple forms of
neurodevelopmental disorders (NDDs), such as intellectual disability (ID), epilepsy and …