An updated classification of cyanobacterial orders and families based on phylogenomic and polyphasic analysis
O Strunecký, AP Ivanova, J Mareš - Journal of Phycology, 2023 - Wiley Online Library
Cyanobacterial taxonomy is facing a period of rapid changes thanks to the ease of 16S
rRNA gene sequencing and established workflows for description of new taxa. Since the last …
rRNA gene sequencing and established workflows for description of new taxa. Since the last …
Global genetic diversity status and trends: towards a suite of Essential Biodiversity Variables (EBVs) for genetic composition
Biodiversity underlies ecosystem resilience, ecosystem function, sustainable economies,
and human well‐being. Understanding how biodiversity sustains ecosystems under …
and human well‐being. Understanding how biodiversity sustains ecosystems under …
[HTML][HTML] Ancient gene linkages support ctenophores as sister to other animals
A central question in evolutionary biology is whether sponges or ctenophores (comb jellies)
are the sister group to all other animals. These alternative phylogenetic hypotheses imply …
are the sister group to all other animals. These alternative phylogenetic hypotheses imply …
Outline of Fungi and fungus-like taxa–2021
This paper provides an updated classification of the Kingdom Fungi (including fossil fungi)
and fungus-like taxa. Five-hundred and twenty-three (535) notes are provided for newly …
and fungus-like taxa. Five-hundred and twenty-three (535) notes are provided for newly …
Global diversity and systematics of Hymenochaetaceae with poroid hymenophore
F Wu, LW Zhou, J Vlasák, YC Dai - Fungal Diversity, 2022 - Springer
Taxonomy and phylogeny of poroid Hymenochaetaceae based on the most comprehensive
phylogenetic analyses are presented. A phylogeny based on a combined dataset of ITS and …
phylogenetic analyses are presented. A phylogeny based on a combined dataset of ITS and …
[HTML][HTML] Inferring the mammal tree: species-level sets of phylogenies for questions in ecology, evolution, and conservation
Big, time-scaled phylogenies are fundamental to connecting evolutionary processes to
modern biodiversity patterns. Yet inferring reliable phylogenetic trees for thousands of …
modern biodiversity patterns. Yet inferring reliable phylogenetic trees for thousands of …
Beginner's guide on the use of PAML to detect positive selection
S Álvarez-Carretero, P Kapli… - Molecular biology and …, 2023 - academic.oup.com
The CODEML program in the PAML package has been widely used to analyze protein-
coding gene sequences to estimate the synonymous and nonsynonymous rates (d S and d …
coding gene sequences to estimate the synonymous and nonsynonymous rates (d S and d …
[HTML][HTML] Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): An overview of families, genera, subgenera, sections, series and …
The Eurotiales is a relatively large order of Ascomycetes with members frequently having
positive and negative impact on human activities. Species within this order gain attention …
positive and negative impact on human activities. Species within this order gain attention …
ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models
ModelTest-NG is a reimplementation from scratch of jModelTest and ProtTest, two popular
tools for selecting the best-fit nucleotide and amino acid substitution models, respectively …
tools for selecting the best-fit nucleotide and amino acid substitution models, respectively …
Using PhyloSuite for molecular phylogeny and tree‐based analyses
CY Xiang, F Gao, I Jakovlić, HP Lei, Y Hu, H Zhang… - Imeta, 2023 - Wiley Online Library
Phylogenetic analysis has entered the genomics (multilocus) era. For less experienced
researchers, conquering the large number of software programs required for a multilocus …
researchers, conquering the large number of software programs required for a multilocus …