Decoding signalling networks by mass spectrometry-based proteomics

C Choudhary, M Mann - Nature reviews Molecular cell biology, 2010 - nature.com
Signalling networks regulate essentially all of the biology of cells and organisms in normal
and disease states. Signalling is often studied using antibody-based techniques such as …

[HTML][HTML] Proliferation and fission of peroxisomes—An update

M Schrader, JL Costello, LF Godinho, AS Azadi… - … et Biophysica Acta (BBA …, 2016 - Elsevier
In mammals, peroxisomes perform crucial functions in cellular metabolism, signalling and
viral defense which are essential to the health and viability of the organism. In order to …

The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices

A Naba, KR Clauser, S Hoersch, H Liu, SA Carr… - Molecular & Cellular …, 2012 - ASBMB
The extracellular matrix (ECM) is a complex meshwork of cross-linked proteins providing
both biophysical and biochemical cues that are important regulators of cell proliferation …

The one hour yeast proteome

AS Hebert, AL Richards, DJ Bailey, A Ulbrich… - Molecular & Cellular …, 2014 - ASBMB
We describe the comprehensive analysis of the yeast proteome in just over one hour of
optimized analysis. We achieve this expedited proteome characterization with improved …

A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics

J Cox, I Matic, M Hilger, N Nagaraj, M Selbach… - Nature protocols, 2009 - nature.com
MaxQuant is a quantitative proteomics software package designed for analyzing large mass
spectrometric data sets. It is specifically aimed at high-resolution mass spectrometry (MS) …

Inhibition of LRRK2 kinase activity leads to dephosphorylation of Ser910/Ser935, disruption of 14-3-3 binding and altered cytoplasmic localization

N Dzamko, M Deak, F Hentati, AD Reith… - Biochemical …, 2010 - portlandpress.com
LRRK2 (leucine-rich repeat protein kinase 2) is mutated in a significant number of
Parkinson's disease patients. Since a common mutation that replaces Gly2019 with a serine …

PHOSIDA 2011: the posttranslational modification database

F Gnad, J Gunawardena, M Mann - Nucleic acids research, 2010 - academic.oup.com
The primary purpose of PHOSIDA (http://www. phosida. com) is to manage posttranslational
modification sites of various species ranging from bacteria to human. Since its last report …

[图书][B] Mammalian transient receptor potential (TRP) cation channels

B Nilius, V Flockerzi - 2014 - Springer
When we edited in 2007 the first issue on transient receptor potential channel in the
Handbook of Experimental Pharmacology, we were all very excited by the progress in this …

Exploring the caves: cavins, caveolins and caveolae

CG Hansen, BJ Nichols - Trends in cell biology, 2010 - cell.com
Caveolae are ampullate (flask-shaped) invaginations that are abundant in the plasma
membrane of many mammalian cell types. Although caveolae are implicated in a wide …

Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass …

P Ostasiewicz, DF Zielinska, M Mann… - Journal of proteome …, 2010 - ACS Publications
Tissue samples in biobanks are typically formalin-fixed and paraffin-embedded (FFPE), in
which form they are preserved for decades. It has only recently been shown that proteins in …