The relationship between genome structure and function

AM Oudelaar, DR Higgs - Nature Reviews Genetics, 2021 - nature.com
Precise patterns of gene expression in metazoans are controlled by three classes of
regulatory elements: promoters, enhancers and boundary elements. During differentiation …

Nonlinear control of transcription through enhancer–promoter interactions

J Zuin, G Roth, Y Zhan, J Cramard, J Redolfi… - Nature, 2022 - nature.com
Chromosome structure in mammals is thought to regulate transcription by modulating three-
dimensional interactions between enhancers and promoters, notably through CTCF …

To loop or not to loop: what is the role of TADs in enhancer function and gene regulation?

GR Cavalheiro, T Pollex, EEM Furlong - Current Opinion in Genetics & …, 2021 - Elsevier
The past decade has seen a huge jump in the resolution and scale at which we can
interrogate the three-dimensional properties of the genome. This revealed different types of …

BAP1 constrains pervasive H2AK119ub1 to control the transcriptional potential of the genome

NA Fursova, AH Turberfield, NP Blackledge… - Genes & …, 2021 - genesdev.cshlp.org
Histone-modifying systems play fundamental roles in gene regulation and the development
of multicellular organisms. Histone modifications that are enriched at gene regulatory …

Genomic context sensitivity of insulator function

AM Ribeiro-dos-Santos, MS Hogan, RD Luther… - Genome …, 2022 - genome.cshlp.org
The specificity of interactions between genomic regulatory elements and potential target
genes is influenced by the binding of insulator proteins such as CTCF, which can act as …

Topologically associating domain boundaries are commonly required for normal genome function

S Rajderkar, I Barozzi, Y Zhu, R Hu, Y Zhang, B Li… - bioRxiv, 2021 - biorxiv.org
Topologically associating domain (TAD) boundaries are thought to partition the genome into
distinct regulatory territories. Anecdotal evidence suggests that their disruption may interfere …

Researchers peek into chromosomes' 3D structure in unprecedented detail

A Dance - Proceedings of the National Academy of …, 2020 - National Acad Sciences
Clodagh O'Shea will never forget the moment in early 2015 when she peered at the cell's
nucleus in a way no one had ever done before. Using a new technique to visualize three …