The relationship between genome structure and function
AM Oudelaar, DR Higgs - Nature Reviews Genetics, 2021 - nature.com
Precise patterns of gene expression in metazoans are controlled by three classes of
regulatory elements: promoters, enhancers and boundary elements. During differentiation …
regulatory elements: promoters, enhancers and boundary elements. During differentiation …
Nonlinear control of transcription through enhancer–promoter interactions
Chromosome structure in mammals is thought to regulate transcription by modulating three-
dimensional interactions between enhancers and promoters, notably through CTCF …
dimensional interactions between enhancers and promoters, notably through CTCF …
To loop or not to loop: what is the role of TADs in enhancer function and gene regulation?
GR Cavalheiro, T Pollex, EEM Furlong - Current Opinion in Genetics & …, 2021 - Elsevier
The past decade has seen a huge jump in the resolution and scale at which we can
interrogate the three-dimensional properties of the genome. This revealed different types of …
interrogate the three-dimensional properties of the genome. This revealed different types of …
BAP1 constrains pervasive H2AK119ub1 to control the transcriptional potential of the genome
NA Fursova, AH Turberfield, NP Blackledge… - Genes & …, 2021 - genesdev.cshlp.org
Histone-modifying systems play fundamental roles in gene regulation and the development
of multicellular organisms. Histone modifications that are enriched at gene regulatory …
of multicellular organisms. Histone modifications that are enriched at gene regulatory …
Genomic context sensitivity of insulator function
AM Ribeiro-dos-Santos, MS Hogan, RD Luther… - Genome …, 2022 - genome.cshlp.org
The specificity of interactions between genomic regulatory elements and potential target
genes is influenced by the binding of insulator proteins such as CTCF, which can act as …
genes is influenced by the binding of insulator proteins such as CTCF, which can act as …
Topologically associating domain boundaries are commonly required for normal genome function
Topologically associating domain (TAD) boundaries are thought to partition the genome into
distinct regulatory territories. Anecdotal evidence suggests that their disruption may interfere …
distinct regulatory territories. Anecdotal evidence suggests that their disruption may interfere …
Researchers peek into chromosomes' 3D structure in unprecedented detail
A Dance - Proceedings of the National Academy of …, 2020 - National Acad Sciences
Clodagh O'Shea will never forget the moment in early 2015 when she peered at the cell's
nucleus in a way no one had ever done before. Using a new technique to visualize three …
nucleus in a way no one had ever done before. Using a new technique to visualize three …