Plant DNA barcoding: from gene to genome

X Li, Y Yang, RJ Henry, M Rossetto, Y Wang… - Biological …, 2015 - Wiley Online Library
ABSTRACT DNA barcoding is currently a widely used and effective tool that enables rapid
and accurate identification of plant species; however, none of the available loci work across …

A framework for incorporating evolutionary genomics into biodiversity conservation and management

A Hoffmann, P Griffin, S Dillon, R Catullo… - Climate Change …, 2015 - Springer
Evolutionary adaptation drives biodiversity. So far, however, evolutionary thinking has had
limited impact on plans to counter the effects of climate change on biodiversity and …

The influence of gene flow on species tree estimation: a simulation study

AD Leaché, RB Harris, B Rannala, Z Yang - Systematic biology, 2014 - academic.oup.com
Gene flow among populations or species and incomplete lineage sorting (ILS) are two
evolutionary processes responsible for generating gene tree discordance and therefore …

Detection and polarization of introgression in a five-taxon phylogeny

JB Pease, MW Hahn - Systematic biology, 2015 - academic.oup.com
When multiple speciation events occur rapidly in succession, discordant genealogies due to
incomplete lineage sorting (ILS) can complicate the detection of introgression. A variety of …

Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high‐Andean diversification (Asteraceae: Astereae: Diplostephium)

OM Vargas, EM Ortiz, BB Simpson - New Phytologist, 2017 - Wiley Online Library
High‐throughput sequencing is helping biologists to overcome the difficulties of inferring the
phylogenies of recently diverged taxa. The present study analyzes the phylogenetic signal of …

Ancestral gene flow and parallel organellar genome capture result in extreme phylogenomic discord in a lineage of angiosperms

RA Folk, JR Mandel, JV Freudenstein - Systematic biology, 2017 - academic.oup.com
While hybridization has recently received a resurgence of attention from systematists and
evolutionary biologists, there remains a dearth of case studies on ancient, diversified hybrid …

An evaluation of alternative explanations for widespread cytonuclear discordance in annual sunflowers (Helianthus)

JA Lee‐Yaw, CJ Grassa, S Joly, RL Andrew… - New …, 2019 - Wiley Online Library
Cytonuclear discordance is commonly observed in phylogenetic studies, yet few studies
have tested whether these patterns reflect incomplete lineage sorting or organellar …

New prospects in the detection and comparative analysis of hybridization in the tree of life

RA Folk, PS Soltis, DE Soltis… - American Journal of …, 2018 - Wiley Online Library
Assessing the relative importance of the various pathways to diversification is a central goal
of biodiversity researchers. For plant biologists, and increasingly across the spectrum of …

Phylogeny and biogeography of wild roses with specific attention to polyploids

M Fougère-Danezan, S Joly, A Bruneau… - Annals of …, 2015 - academic.oup.com
Abstract Background and Aims The genus Rosa (150–200 species) is widely distributed
throughout temperate and sub-tropical habitats from the northern hemisphere to tropical …

Coalescent Species Delimitation in Milksnakes (Genus Lampropeltis) and Impacts on Phylogenetic Comparative Analyses

S Ruane, RW Bryson Jr, RA Pyron… - Systematic …, 2014 - academic.oup.com
Both gene-tree discordance and unrecognized diversity are sources of error for accurate
estimation of species trees, and can affect downstream diversification analyses by obscuring …