[HTML][HTML] Noncanonical DNA structures are drivers of genome evolution

KD Makova, MH Weissensteiner - Trends in Genetics, 2023 - cell.com
In addition to the canonical right-handed double helix, other DNA structures, termed 'non-B
DNA', can form in the genomes across the tree of life. Non-B DNA regulates multiple cellular …

Contextualizing context for synthetic biology–identifying causes of failure of synthetic biological systems

S Cardinale, AP Arkin - Biotechnology journal, 2012 - Wiley Online Library
Despite the efforts that bioengineers have exerted in designing and constructing biological
processes that function according to a predetermined set of rules, their operation remains …

Bacterial RNA thermometers: molecular zippers and switches

J Kortmann, F Narberhaus - Nature reviews microbiology, 2012 - nature.com
Bacteria use complex strategies to coordinate temperature-dependent gene expression.
Many genes encoding heat shock proteins and virulence factors are regulated by …

Regulation of heat-shock genes in bacteria: from signal sensing to gene expression output

D Roncarati, V Scarlato - FEMS microbiology reviews, 2017 - academic.oup.com
The heat-shock response is a mechanism of cellular protection against sudden adverse
environmental growth conditions and results in the prompt production of various heat-shock …

H-NS: a universal regulator for a dynamic genome

CJ Dorman - Nature Reviews Microbiology, 2004 - nature.com
The effect of the bacterial heat-stable nucleoid-structuring (H-NS) protein on gene
expression is overwhelmingly negative and extends throughout the genome, pointing to an …

The role of nucleoid‐associated proteins in the organization and compaction of bacterial chromatin

RT Dame - Molecular microbiology, 2005 - Wiley Online Library
The bacterial chromosomal DNA is folded into a compact structure called nucleoid. The
shape and size of this 'body'is determined by a number of factors. Major players are DNA …

Silencing of xenogeneic DNA by H-NS—facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA

WW Navarre, M McClelland, SJ Libby… - Genes & …, 2007 - genesdev.cshlp.org
Lateral gene transfer has played a prominent role in bacterial evolution, but the mechanisms
allowing bacteria to tolerate the acquisition of foreign DNA have been incompletely defined …

H-NS, the genome sentinel

CJ Dorman - Nature Reviews Microbiology, 2007 - nature.com
Two recent reports have indicated that the H-NS protein in Salmonella enterica serovar
Typhimurium has a key role in selectively silencing the transcription of large numbers of …

The varied role of efflux pumps of the MFS family in the interplay of bacteria with animal and plant cells

M Pasqua, M Grossi, A Zennaro, G Fanelli, G Micheli… - Microorganisms, 2019 - mdpi.com
Efflux pumps represent an important and large group of transporter proteins found in all
organisms. The importance of efflux pumps resides in their ability to extrude a wide range of …

Anti-silencing: overcoming H-NS-mediated repression of transcription in Gram-negative enteric bacteria

DM Stoebel, A Free, CJ Dorman - Microbiology, 2008 - microbiologyresearch.org
The H-NS nucleoid-associated DNA-binding protein is an important global repressor of
transcription in Gram-negative bacteria. Recently, H-NS has been implicated in the process …