[HTML][HTML] From RNA-seq reads to differential expression results

A Oshlack, MD Robinson, MD Young - Genome biology, 2010 - Springer
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[HTML][HTML] Applications of DNA tiling arrays for whole-genome analysis

TC Mockler, JR Ecker - Genomics, 2005 - Elsevier
DNA microarrays are a well-established technology for measuring gene expression levels.
Microarrays designed for this purpose use relatively few probes for each gene and are …

[HTML][HTML] Gremlin 1 identifies a skeletal stem cell with bone, cartilage, and reticular stromal potential

DL Worthley, M Churchill, JT Compton, Y Tailor, M Rao… - Cell, 2015 - cell.com
The stem cells that maintain and repair the postnatal skeleton remain undefined. One model
suggests that perisinusoidal mesenchymal stem cells (MSCs) give rise to osteoblasts …

CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set

WC Reinhold, M Sunshine, H Liu, S Varma, KW Kohn… - Cancer research, 2012 - AACR
High-throughput and high-content databases are increasingly important resources in
molecular medicine, systems biology, and pharmacology. However, the information usually …

Genomes of replicatively senescent cells undergo global epigenetic changes leading to gene silencing and activation of transposable elements

M De Cecco, SW Criscione, EJ Peckham… - Aging cell, 2013 - Wiley Online Library
Replicative cellular senescence is an important tumor suppression mechanism and also
contributes to aging. Progression of both cancer and aging include significant epigenetic …

A model-based background adjustment for oligonucleotide expression arrays

Z Wu, RA Irizarry, R Gentleman… - Journal of the …, 2004 - Taylor & Francis
High-density oligonucleotide expression arrays are widely used in many areas of
biomedical research. Affymetrix GeneChip arrays are the most popular. In the Affymetrix …

[HTML][HTML] Transcript length bias in RNA-seq data confounds systems biology

A Oshlack, MJ Wakefield - Biology direct, 2009 - Springer
Background Several recent studies have demonstrated the effectiveness of deep
sequencing for transcriptome analysis (RNA-seq) in mammals. As RNA-seq becomes more …

A high-resolution map of transcription in the yeast genome

L David, W Huber, M Granovskaia… - Proceedings of the …, 2006 - National Acad Sciences
There is abundant transcription from eukaryotic genomes unaccounted for by protein coding
genes. A high-resolution genome-wide survey of transcription in a well annotated genome …

[HTML][HTML] Expression analysis of G Protein-Coupled Receptors in mouse macrophages

JE Lattin, K Schroder, AI Su, JR Walker, J Zhang… - Immunome …, 2008 - Springer
Background Monocytes and macrophages express an extensive repertoire of G Protein-
Coupled Receptors (GPCRs) that regulate inflammation and immunity. In this study we …

Circadian variation of blood pressure and the vascular response to asynchronous stress

AM Curtis, Y Cheng, S Kapoor… - Proceedings of the …, 2007 - National Acad Sciences
The diurnal variation in the incidence of myocardial infarction and stroke may reflect an
influence of the molecular clock and/or the time dependence of exposure to environmental …