[HTML][HTML] From RNA-seq reads to differential expression results
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[HTML][HTML] Applications of DNA tiling arrays for whole-genome analysis
TC Mockler, JR Ecker - Genomics, 2005 - Elsevier
DNA microarrays are a well-established technology for measuring gene expression levels.
Microarrays designed for this purpose use relatively few probes for each gene and are …
Microarrays designed for this purpose use relatively few probes for each gene and are …
[HTML][HTML] Gremlin 1 identifies a skeletal stem cell with bone, cartilage, and reticular stromal potential
The stem cells that maintain and repair the postnatal skeleton remain undefined. One model
suggests that perisinusoidal mesenchymal stem cells (MSCs) give rise to osteoblasts …
suggests that perisinusoidal mesenchymal stem cells (MSCs) give rise to osteoblasts …
CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set
High-throughput and high-content databases are increasingly important resources in
molecular medicine, systems biology, and pharmacology. However, the information usually …
molecular medicine, systems biology, and pharmacology. However, the information usually …
Genomes of replicatively senescent cells undergo global epigenetic changes leading to gene silencing and activation of transposable elements
M De Cecco, SW Criscione, EJ Peckham… - Aging cell, 2013 - Wiley Online Library
Replicative cellular senescence is an important tumor suppression mechanism and also
contributes to aging. Progression of both cancer and aging include significant epigenetic …
contributes to aging. Progression of both cancer and aging include significant epigenetic …
A model-based background adjustment for oligonucleotide expression arrays
Z Wu, RA Irizarry, R Gentleman… - Journal of the …, 2004 - Taylor & Francis
High-density oligonucleotide expression arrays are widely used in many areas of
biomedical research. Affymetrix GeneChip arrays are the most popular. In the Affymetrix …
biomedical research. Affymetrix GeneChip arrays are the most popular. In the Affymetrix …
[HTML][HTML] Transcript length bias in RNA-seq data confounds systems biology
A Oshlack, MJ Wakefield - Biology direct, 2009 - Springer
Background Several recent studies have demonstrated the effectiveness of deep
sequencing for transcriptome analysis (RNA-seq) in mammals. As RNA-seq becomes more …
sequencing for transcriptome analysis (RNA-seq) in mammals. As RNA-seq becomes more …
A high-resolution map of transcription in the yeast genome
There is abundant transcription from eukaryotic genomes unaccounted for by protein coding
genes. A high-resolution genome-wide survey of transcription in a well annotated genome …
genes. A high-resolution genome-wide survey of transcription in a well annotated genome …
[HTML][HTML] Expression analysis of G Protein-Coupled Receptors in mouse macrophages
JE Lattin, K Schroder, AI Su, JR Walker, J Zhang… - Immunome …, 2008 - Springer
Background Monocytes and macrophages express an extensive repertoire of G Protein-
Coupled Receptors (GPCRs) that regulate inflammation and immunity. In this study we …
Coupled Receptors (GPCRs) that regulate inflammation and immunity. In this study we …
Circadian variation of blood pressure and the vascular response to asynchronous stress
AM Curtis, Y Cheng, S Kapoor… - Proceedings of the …, 2007 - National Acad Sciences
The diurnal variation in the incidence of myocardial infarction and stroke may reflect an
influence of the molecular clock and/or the time dependence of exposure to environmental …
influence of the molecular clock and/or the time dependence of exposure to environmental …