Whole genome sequencing analysis for cancer genomics and precision medicine

H Nakagawa, M Fujita - Cancer science, 2018 - Wiley Online Library
Explosive advances in next‐generation sequencer (NGS) and computational analyses have
enabled exploration of somatic protein‐altered mutations in most cancer types, with coding …

MYC deregulation in primary human cancers

M Kalkat, J De Melo, KA Hickman, C Lourenco… - Genes, 2017 - mdpi.com
MYC regulates a complex biological program by transcriptionally activating and repressing
its numerous target genes. As such, MYC is a master regulator of many processes, including …

New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx

M Mounir, M Lucchetta, TC Silva, C Olsen… - PLoS computational …, 2019 - journals.plos.org
The advent of Next-Generation Sequencing (NGS) technologies has opened new
perspectives in deciphering the genetic mechanisms underlying complex diseases …

Next generation sequencing‐based gene panel tests for the management of solid tumors

M Nagahashi, Y Shimada, H Ichikawa… - Cancer …, 2019 - Wiley Online Library
Next generation sequencing (NGS) has been an invaluable tool to put genomic sequencing
into clinical practice. The incorporation of clinically relevant target sequences into NGS …

Role of ribosomal protein mutations in tumor development

KM Goudarzi, MS LINDSTRöM - … journal of oncology, 2016 - spandidos-publications.com
Ribosomes are cellular machines essential for protein synthesis. The biogenesis of
ribosomes is a highly complex and energy consuming process that initiates in the nucleolus …

Targeted sequencing approach and its clinical applications for the molecular diagnosis of human diseases

XM Pei, MHY Yeung, ANN Wong, HF Tsang, ACS Yu… - Cells, 2023 - mdpi.com
The outbreak of COVID-19 has positively impacted the NGS market recently. Targeted
sequencing (TS) has become an important routine technique in both clinical and research …

In silico polypharmacology of natural products

J Fang, C Liu, Q Wang, P Lin… - Briefings in bioinformatics, 2018 - academic.oup.com
Natural products with polypharmacological profiles have demonstrated promise as novel
therapeutics for various complex diseases, including cancer. Currently, many gaps exist in …

Psychosocial effect of newborn genomic sequencing on families in the BabySeq Project: a randomized clinical trial

S Pereira, HS Smith, LA Frankel… - JAMA …, 2021 - jamanetwork.com
Importance Newborn genomic sequencing (nGS) may provide health benefits throughout
the life span, but there are concerns that it could also have an unfavorable (ie, negative) …

[HTML][HTML] A Comprehensive Review of Bioinformatics Tools for Genomic Biomarker Discovery Driving Precision Oncology

AJ Clark, JW Lillard Jr - Genes, 2024 - mdpi.com
The rapid advancement of high-throughput technologies, particularly next-generation
sequencing (NGS), has revolutionized cancer research by enabling the investigation of …

Genomic newborn screening: public health policy considerations and recommendations

JM Friedman, MC Cornel, AJ Goldenberg… - BMC medical …, 2017 - Springer
Background The use of genome-wide (whole genome or exome) sequencing for population-
based newborn screening presents an opportunity to detect and treat or prevent many more …