X-ray-based 3D virtual histology—Adding the next dimension to histological analysis

J Albers, S Pacilé, MA Markus, M Wiart… - Molecular Imaging and …, 2018 - Springer
Histology and immunohistochemistry of thin tissue sections have been the standard
diagnostic procedure in many diseases for decades. This method is highly specific for …

Machine learning analysis of whole mouse brain vasculature

MI Todorov, JC Paetzold, O Schoppe, G Tetteh, S Shit… - Nature …, 2020 - nature.com
Tissue clearing methods enable the imaging of biological specimens without sectioning.
However, reliable and scalable analysis of large imaging datasets in three dimensions …

Dense neuronal reconstruction through X-ray holographic nano-tomography

AT Kuan - Biophysical Journal, 2020 - cell.com
1416-Pos Modulation of Human Stem Cell Derived Neuron Activity through Addition of an
External Conductance using Dynamic Clamp Brian K. Panama1, Leigh Korbel1, Brandon …

Three-dimensional virtual histology of human cerebellum by X-ray phase-contrast tomography

M Töpperwien, F van der Meer… - Proceedings of the …, 2018 - National Acad Sciences
To quantitatively evaluate brain tissue and its corresponding function, knowledge of the 3D
cellular distribution is essential. The gold standard to obtain this information is histology, a …

Computational 3D histological phenotyping of whole zebrafish by X-ray histotomography

Y Ding, DJ Vanselow, MA Yakovlev, SR Katz, AY Lin… - Elife, 2019 - elifesciences.org
Organismal phenotypes frequently involve multiple organ systems. Histology is a powerful
way to detect cellular and tissue phenotypes, but is largely descriptive and subjective. To …

[PDF][PDF] Upscaling X-ray nanoimaging to macroscopic specimens

M Du, Z Di, D Gürsoy, RP Xian… - Journal of applied …, 2021 - journals.iucr.org
Upscaling X-ray nanoimaging to macroscopic specimens has the potential for providing
insights across multiple length scales, but its feasibility has long been an open question. By …

Low-dose x-ray tomography through a deep convolutional neural network

X Yang, V De Andrade, W Scullin, EL Dyer… - Scientific reports, 2018 - nature.com
Synchrotron-based X-ray tomography offers the potential for rapid large-scale
reconstructions of the interiors of materials and biological tissue at fine resolution. However …

Three-dimensional virtual histology of the human hippocampus based on phase-contrast computed tomography

M Eckermann, B Schmitzer… - Proceedings of the …, 2021 - National Acad Sciences
We have studied the three-dimensional (3D) cytoarchitecture of the human hippocampus in
neuropathologically healthy and Alzheimer's disease (AD) individuals, based on phase …

VascuViz: a multimodality and multiscale imaging and visualization pipeline for vascular systems biology

A Bhargava, B Monteagudo, P Kushwaha… - Nature …, 2022 - nature.com
Despite advances in imaging, image-based vascular systems biology has remained
challenging because blood vessel data are often available only from a single modality or at …

[HTML][HTML] Virtual histology of an entire mouse brain from formalin fixation to paraffin embedding. Part 1: Data acquisition, anatomical feature segmentation, tracking …

G Rodgers, W Kuo, G Schulz, M Scheel, A Migga… - Journal of Neuroscience …, 2021 - Elsevier
Background: Micrometer-resolution neuroimaging with gold-standard conventional histology
requires tissue fixation and embedding. The exchange of solvents for the creation of …