A crucial role for maternal dietary methyl donor intake in epigenetic programming and fetal growth outcomes

M McGee, S Bainbridge, B Fontaine-Bisson - Nutrition reviews, 2018 - academic.oup.com
The fetal origins of health and disease framework has identified extremes in fetal growth and
birth weight as factors associated with the lifelong generation of chronic diseases such as …

Evaluation and comparison of multi-omics data integration methods for cancer subtyping

R Duan, L Gao, Y Gao, Y Hu, H Xu… - PLoS computational …, 2021 - journals.plos.org
Computational integrative analysis has become a significant approach in the data-driven
exploration of biological problems. Many integration methods for cancer subtyping have …

Comparative pan-cancer DNA methylation analysis reveals cancer common and specific patterns

X Yang, L Gao, S Zhang - Briefings in bioinformatics, 2017 - academic.oup.com
Abnormal DNA methylation is an important epigenetic regulator involving tumorigenesis.
Deciphering cancer common and specific DNA methylation patterns is essential for us to …

BNDF methylation in mothers and newborns is associated with maternal exposure to war trauma

DA Kertes, SS Bhatt, HS Kamin, DA Hughes… - Clinical …, 2017 - Springer
Background The BDNF gene codes for brain-derived neurotrophic factor, a growth factor
involved in neural development, cell differentiation, and synaptic plasticity. Present in both …

[HTML][HTML] DNA methylation, combined with RNA sequencing, provide novel insight into molecular classification of chordomas and their microenvironment

S Baluszek, P Kober, N Rusetska, M Wągrodzki… - Acta Neuropathologica …, 2023 - Springer
Chordomas are rare tumors of notochord remnants, occurring mainly in the sacrum and skull
base. Despite of their unusually slow growth, chordomas are highly invasive and the …

Systematic identification and annotation of human methylation marks based on bisulfite sequencing methylomes reveals distinct roles of cell type-specific …

H Liu, X Liu, S Zhang, J Lv, S Li, S Shang… - Nucleic acids …, 2016 - academic.oup.com
DNA methylation is a key epigenetic mark that is critical for gene regulation in multicellular
eukaryotes. Although various human cell types may have the same genome, these cells …

DNA methylation dynamics: identification and functional annotation

H Liu, S Li, X Wang, J Zhu, Y Wei… - Briefings in …, 2016 - academic.oup.com
DNA methylation is an epigenetic modification of cytosines that undergoes dynamic
changes in a temporal, spatial and cell-type-specific manner. Recent advances in …

CD47 is a direct target of SNAI1 and ZEB1 and its blockade activates the phagocytosis of breast cancer cells undergoing EMT

MZ Noman, K Van Moer, V Marani, RM Gemmill… - …, 2018 - Taylor & Francis
We report that CD47 was upregulated in different EMT-activated human breast cancer cells
versus epithelial MCF7 cells. Overexpression of SNAI1 or ZEB1 in epithelial MCF7 cells …

Multiple network algorithm for epigenetic modules via the integration of genome-wide DNA methylation and gene expression data

X Ma, Z Liu, Z Zhang, X Huang, W Tang - BMC bioinformatics, 2017 - Springer
Background With the increase in the amount of DNA methylation and gene expression data,
the epigenetic mechanisms of cancers can be extensively investigate. Available methods …

Pan-cancer analysis of frequent DNA co-methylation patterns reveals consistent epigenetic landscape changes in multiple cancers

J Zhang, K Huang - Bmc Genomics, 2017 - Springer
Background DNA methylation is the major form of epigenetic modifications through which
the cell regulates the gene expression and silencing. There have been extensive studies on …