Evolutionary diversification of the autophagy-related ubiquitin-like conjugation systems

S Zhang, E Yazaki, H Sakamoto, H Yamamoto… - Autophagy, 2022 - Taylor & Francis
Two autophagy-related (ATG) ubiquitin-like conjugation systems, the ATG12 and ATG8
systems, play important roles in macroautophagy. While multiple duplications and losses of …

Intrinsically Disordered and Pliable Starmaker-Like Protein from Medaka (Oryzias latipes) Controls the Formation of Calcium Carbonate Crystals

M Różycka, M Wojtas, M Jakób, C Stigloher… - PLoS …, 2014 - journals.plos.org
Fish otoliths, biominerals composed of calcium carbonate with a small amount of organic
matrix, are involved in the functioning of the inner ear. Starmaker (Stm) from zebrafish …

Quantifying adhesion of acidophilic bioleaching bacteria to silica and pyrite by atomic force microscopy with a bacterial probe

M Diao, E Taran, S Mahler, TAH Nguyen… - Colloids and surfaces B …, 2014 - Elsevier
The adhesion of acidophilic bacteria to mineral surfaces is an important phenomenon in
bioleaching processes. In this study, functionalized colloidal probes covered by bioleaching …

Mechanistic insight into protein modification and sulfur mobilization activities of noncanonical E1 and associated ubiquitin‐like proteins of archaea

NL Hepowit, IMS de Vera, S Cao, X Fu, Y Wu… - The FEBS …, 2016 - Wiley Online Library
Here we provide the first detailed biochemical study of a noncanonical E1‐like enzyme with
broad specificity for cognate ubiquitin‐like (Ubl) proteins that mediates Ubl protein …

Mechanism of salt-induced activity enhancement of a marine-derived laccase, Lac15

J Li, Y Xie, R Wang, Z Fang, W Fang, X Zhang… - European Biophysics …, 2018 - Springer
Laccase (benzenediol: oxygen oxidoreductases, EC1. 10.3. 2) is a multi-copper oxidase
capable of oxidizing a variety of phenolic and other aromatic organic compounds. The …

Structural and biochemical properties of an extreme 'salt-loving' proteasome activating nucleotidase from the archaeon Haloferax volcanii

L Prunetti, CJ Reuter, NL Hepowit, Y Wu, L Barrueto… - Extremophiles, 2014 - Springer
In eukaryotes, the 26S proteasome degrades ubiquitinylated proteins in an ATP-dependent
manner. Archaea mediate a form of post-translational modification of proteins termed …

Halophilic to mesophilic adaptation of ubiquitin‐like proteins

Q Li, M Li, C Li, X Li, C Lu, X Tu, Z Zhang… - FEBS letters, 2021 - Wiley Online Library
Elucidating how proteins adapt from halophilic to mesophilic environments will enable a
better understanding of protein evolution and folding. In this study, by directed evolution and …

Characterization of the deubiquitination activity and substrate specificity of the chicken ubiquitin-specific protease 1/USP associated factor 1 complex

H Zheng, M Wang, C Zhao, S Wu, P Yu, Y Lü, T Wang… - Plos one, 2017 - journals.plos.org
Deubiquitinases (DUBs) are essential regulators of intracellular processes involving
ubiquitin (Ub) modification. The human DUB ubiquitin-specific protease 1 (hUSP1) interacts …

[PDF][PDF] Jie Li, Yanan Xie, Rui Wang, Zemin Fang, Wei Fang, Xuecheng Zhang &

Y Xiao - researchgate.net
Revised: 7 August 2017/Accepted: 23 August 2017© European Biophysical Societies'
Association 2017 activity is promoted by low concentrations of NaCl. The results showed …

Mass spectrometry analysis of amyloid formation mechanisms

PD Knight - 2017 - etheses.whiterose.ac.uk
More than 50 human conditions are characterised by the deposition of aberrantly
aggregated proteins into amyloid fibrils. These diseases range from neurodegenerative …