Ready, Steady, Go AI: A practical tutorial on fundamentals of artificial intelligence and its applications in phenomics image analysis
F Nakhle, AL Harfouche - Patterns, 2021 - cell.com
High-throughput image-based technologies are now widely used in the rapidly developing
field of digital phenomics and are generating ever-increasing amounts and diversity of data …
field of digital phenomics and are generating ever-increasing amounts and diversity of data …
Biclustering data analysis: a comprehensive survey
Biclustering, the simultaneous clustering of rows and columns of a data matrix, has proved
its effectiveness in bioinformatics due to its capacity to produce local instead of global …
its effectiveness in bioinformatics due to its capacity to produce local instead of global …
An integrated photonics engine for unsupervised correlation detection
S Ghazi Sarwat, F Brückerhoff-Plückelmann… - Science …, 2022 - science.org
With more and more aspects of modern life and scientific tools becoming digitized, the
amount of data being generated is growing exponentially. Fast and efficient statistical …
amount of data being generated is growing exponentially. Fast and efficient statistical …
Bioinformatics and Functional Analyses Implicate Potential Roles for EOGT and L-fringe in Pancreatic Cancers
Notch signaling receptors, ligands, and their downstream target genes are dysregulated in
pancreatic ductal adenocarcinoma (PDAC), suggesting a role of Notch signaling in …
pancreatic ductal adenocarcinoma (PDAC), suggesting a role of Notch signaling in …
Spike-and-slab lasso biclustering
The supplementary file contains (i) details of the SSLB algorithm;(ii) details of bicluster
quality metrics;(iii) additional figures for Simulations 1 and 2;(iv) results of Simulations 3 and …
quality metrics;(iii) additional figures for Simulations 1 and 2;(iv) results of Simulations 3 and …
EBIC: an evolutionary-based parallel biclustering algorithm for pattern discovery
Motivation Biclustering algorithms are commonly used for gene expression data analysis.
However, accurate identification of meaningful structures is very challenging and state-of-the …
However, accurate identification of meaningful structures is very challenging and state-of-the …
POPTric: Pathway-based Order Preserving Triclustering for gene sample time data analysis
K Mandal, R Sarmah, DK Bhattacharyya - Expert Systems with Applications, 2022 - Elsevier
Exploratory analysis of high throughput gene sample time (GST) data has an impact in
biomedical and bioinformatics research. Mining gene expression pattern in such three …
biomedical and bioinformatics research. Mining gene expression pattern in such three …
Seed dormancy involves a transcriptional program that supports early plastid functionality during imbibition
A Gianinetti, F Finocchiaro, P Bagnaresi, A Zechini… - Plants, 2018 - mdpi.com
Red rice fully dormant seeds do not germinate even under favorable germination conditions.
In several species, including rice, seed dormancy can be removed by dry-afterripening …
In several species, including rice, seed dormancy can be removed by dry-afterripening …
[HTML][HTML] bioScience: A new python science library for high-performance computing bioinformatics analytics
A López-Fernández, FA Gómez-Vela… - SoftwareX, 2024 - Elsevier
BioScience is an advanced Python library designed to satisfy the growing data analysis
needs in the field of bioinformatics by leveraging High-Performance Computing (HPC). This …
needs in the field of bioinformatics by leveraging High-Performance Computing (HPC). This …
Popbic: pathway-based order preserving biclustering algorithm towards the analysis of gene expression data
K Mandal, R Sarmah… - IEEE/ACM Transactions …, 2020 - ieeexplore.ieee.org
To understand the underlying biological mechanisms of gene expression data, it is important
to discover the groups of genes that have similar expression patterns under certain subsets …
to discover the groups of genes that have similar expression patterns under certain subsets …