Ready, Steady, Go AI: A practical tutorial on fundamentals of artificial intelligence and its applications in phenomics image analysis

F Nakhle, AL Harfouche - Patterns, 2021 - cell.com
High-throughput image-based technologies are now widely used in the rapidly developing
field of digital phenomics and are generating ever-increasing amounts and diversity of data …

Biclustering data analysis: a comprehensive survey

EN Castanho, H Aidos, SC Madeira - Briefings in Bioinformatics, 2024 - academic.oup.com
Biclustering, the simultaneous clustering of rows and columns of a data matrix, has proved
its effectiveness in bioinformatics due to its capacity to produce local instead of global …

An integrated photonics engine for unsupervised correlation detection

S Ghazi Sarwat, F Brückerhoff-Plückelmann… - Science …, 2022 - science.org
With more and more aspects of modern life and scientific tools becoming digitized, the
amount of data being generated is growing exponentially. Fast and efficient statistical …

Bioinformatics and Functional Analyses Implicate Potential Roles for EOGT and L-fringe in Pancreatic Cancers

R Barua, K Mizuno, Y Tashima, M Ogawa, H Takeuchi… - Molecules, 2021 - mdpi.com
Notch signaling receptors, ligands, and their downstream target genes are dysregulated in
pancreatic ductal adenocarcinoma (PDAC), suggesting a role of Notch signaling in …

Spike-and-slab lasso biclustering

GE Moran, V Ročková, EI George - 2021 - projecteuclid.org
The supplementary file contains (i) details of the SSLB algorithm;(ii) details of bicluster
quality metrics;(iii) additional figures for Simulations 1 and 2;(iv) results of Simulations 3 and …

EBIC: an evolutionary-based parallel biclustering algorithm for pattern discovery

P Orzechowski, M Sipper, X Huang, JH Moore - Bioinformatics, 2018 - academic.oup.com
Motivation Biclustering algorithms are commonly used for gene expression data analysis.
However, accurate identification of meaningful structures is very challenging and state-of-the …

POPTric: Pathway-based Order Preserving Triclustering for gene sample time data analysis

K Mandal, R Sarmah, DK Bhattacharyya - Expert Systems with Applications, 2022 - Elsevier
Exploratory analysis of high throughput gene sample time (GST) data has an impact in
biomedical and bioinformatics research. Mining gene expression pattern in such three …

Seed dormancy involves a transcriptional program that supports early plastid functionality during imbibition

A Gianinetti, F Finocchiaro, P Bagnaresi, A Zechini… - Plants, 2018 - mdpi.com
Red rice fully dormant seeds do not germinate even under favorable germination conditions.
In several species, including rice, seed dormancy can be removed by dry-afterripening …

[HTML][HTML] bioScience: A new python science library for high-performance computing bioinformatics analytics

A López-Fernández, FA Gómez-Vela… - SoftwareX, 2024 - Elsevier
BioScience is an advanced Python library designed to satisfy the growing data analysis
needs in the field of bioinformatics by leveraging High-Performance Computing (HPC). This …

Popbic: pathway-based order preserving biclustering algorithm towards the analysis of gene expression data

K Mandal, R Sarmah… - IEEE/ACM Transactions …, 2020 - ieeexplore.ieee.org
To understand the underlying biological mechanisms of gene expression data, it is important
to discover the groups of genes that have similar expression patterns under certain subsets …