[HTML][HTML] On the road to explainable AI in drug-drug interactions prediction: A systematic review

TH Vo, NTK Nguyen, QH Kha, NQK Le - Computational and Structural …, 2022 - Elsevier
Over the past decade, polypharmacy instances have been common in multi-diseases
treatment. However, unwanted drug-drug interactions (DDIs) that might cause unexpected …

A survey on annotation tools for the biomedical literature

M Neves, U Leser - Briefings in bioinformatics, 2014 - academic.oup.com
New approaches to biomedical text mining crucially depend on the existence of
comprehensive annotated corpora. Such corpora, commonly called gold standards, are …

[HTML][HTML] The DDI corpus: An annotated corpus with pharmacological substances and drug–drug interactions

M Herrero-Zazo, I Segura-Bedmar, P Martínez… - Journal of biomedical …, 2013 - Elsevier
The management of drug–drug interactions (DDIs) is a critical issue resulting from the
overwhelming amount of information available on them. Natural Language Processing …

Toward a complete dataset of drug–drug interaction information from publicly available sources

S Ayvaz, J Horn, O Hassanzadeh, Q Zhu, J Stan… - Journal of biomedical …, 2015 - Elsevier
Although potential drug–drug interactions (PDDIs) are a significant source of preventable
drug-related harm, there is currently no single complete source of PDDI information. In the …

PHEE: A dataset for pharmacovigilance event extraction from text

Z Sun, J Li, G Pergola, BC Wallace, B John… - arXiv preprint arXiv …, 2022 - arxiv.org
The primary goal of drug safety researchers and regulators is to promptly identify adverse
drug reactions. Doing so may in turn prevent or reduce the harm to patients and ultimately …

[HTML][HTML] tax2vec: Constructing interpretable features from taxonomies for short text classification

B Škrlj, M Martinc, J Kralj, N Lavrač, S Pollak - Computer Speech & …, 2021 - Elsevier
The use of background knowledge is largely unexploited in text classification tasks. This
paper explores word taxonomies as means for constructing new semantic features, which …

Weighted matrix factorization on multi-relational data for LncRNA-disease association prediction

Y Wang, G Yu, J Wang, G Fu, M Guo, C Domeniconi - Methods, 2020 - Elsevier
Influx evidences show that red long non-coding RNAs (lncRNAs) play important roles in
various critical biological processes, and they afffect the development and progression of …

Drug name recognition: approaches and resources

S Liu, B Tang, Q Chen, X Wang - Information, 2015 - mdpi.com
Drug name recognition (DNR), which seeks to recognize drug mentions in unstructured
medical texts and classify them into pre-defined categories, is a fundamental task of medical …

Annotation and detection of drug effects in text for pharmacovigilance

P Thompson, S Daikou, K Ueno… - Journal of …, 2018 - Springer
Pharmacovigilance (PV) databases record the benefits and risks of different drugs, as a
means to ensure their safe and effective use. Creating and maintaining such resources can …

Information needs for making clinical recommendations about potential drug-drug interactions: a synthesis of literature review and interviews

KM Romagnoli, SD Nelson, L Hines, P Empey… - BMC medical informatics …, 2017 - Springer
Background Drug information compendia and drug-drug interaction information databases
are critical resources for clinicians and pharmacists working to avoid adverse events due to …