[HTML][HTML] Network resilience
Many systems on our planet shift abruptly and irreversibly from the desired state to an
undesired state when forced across a “tipping point”. Some examples are mass extinctions …
undesired state when forced across a “tipping point”. Some examples are mass extinctions …
Biological robustness
H Kitano - Nature Reviews Genetics, 2004 - nature.com
Robustness is a ubiquitously observed property of biological systems. It is considered to be
a fundamental feature of complex evolvable systems. It is attained by several underlying …
a fundamental feature of complex evolvable systems. It is attained by several underlying …
Evolutionary network analysis: A survey
C Aggarwal, K Subbian - ACM Computing Surveys (CSUR), 2014 - dl.acm.org
Evolutionary network analysis has found an increasing interest in the literature because of
the importance of different kinds of dynamic social networks, email networks, biological …
the importance of different kinds of dynamic social networks, email networks, biological …
Turning a hobby into a job: how duplicated genes find new functions
Gene duplication provides raw material for functional innovation. Recent advances have
shed light on two fundamental questions regarding gene duplication: which genes tend to …
shed light on two fundamental questions regarding gene duplication: which genes tend to …
Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes
TJ Treangen, EPC Rocha - PLoS genetics, 2011 - journals.plos.org
Gene duplication followed by neo-or sub-functionalization deeply impacts the evolution of
protein families and is regarded as the main source of adaptive functional novelty in …
protein families and is regarded as the main source of adaptive functional novelty in …
Analyzing and modeling real-world phenomena with complex networks: a survey of applications
The success of new scientific areas can be assessed by their potential in contributing to new
theoretical approaches and in applications to real-world problems. Complex networks have …
theoretical approaches and in applications to real-world problems. Complex networks have …
Structure and evolution of transcriptional regulatory networks
The regulatory interactions between transcription factors and their target genes can be
conceptualised as a directed graph. At a global level, these regulatory networks display a …
conceptualised as a directed graph. At a global level, these regulatory networks display a …
The many faces of the helix-turn-helix domain: transcription regulation and beyond
The helix-turn-helix (HTH) domain is a common denominator in basal and specific
transcription factors from the three super-kingdoms of life. At its core, the domain comprises …
transcription factors from the three super-kingdoms of life. At its core, the domain comprises …
[HTML][HTML] Plant microRNA: a small regulatory molecule with big impact
MicroRNAs (miRNAs) are an abundant new class of non-coding∼ 20–24 nt small RNAs. To
date, 872 miRNAs, belonging to 42 families, have been identified in 71 plant species by …
date, 872 miRNAs, belonging to 42 families, have been identified in 71 plant species by …
Evolutionary genetics of genome merger and doubling in plants
Polyploidy is a common mode of evolution in flowering plants. The profound effects of
polyploidy on gene expression appear to be caused more by hybridity than by genome …
polyploidy on gene expression appear to be caused more by hybridity than by genome …