[HTML][HTML] Deciphering the multi-scale, quantitative cis-regulatory code
S Kim, J Wysocka - Molecular cell, 2023 - cell.com
Uncovering the cis-regulatory code that governs when and how much each gene is
transcribed in a given genome and cellular state remains a central goal of biology. Here, we …
transcribed in a given genome and cellular state remains a central goal of biology. Here, we …
[HTML][HTML] The Mediator complex as a master regulator of transcription by RNA polymerase II
WF Richter, S Nayak, J Iwasa, DJ Taatjes - Nature Reviews Molecular …, 2022 - nature.com
The Mediator complex, which in humans is 1.4 MDa in size and includes 26 subunits,
controls many aspects of RNA polymerase II (Pol II) function. Apart from its size, a defining …
controls many aspects of RNA polymerase II (Pol II) function. Apart from its size, a defining …
[HTML][HTML] Transcription factors interact with RNA to regulate genes
O Oksuz, JE Henninger, R Warneford-Thomson… - Molecular cell, 2023 - cell.com
Transcription factors (TFs) orchestrate the gene expression programs that define each cell's
identity. The canonical TF accomplishes this with two domains, one that binds specific DNA …
identity. The canonical TF accomplishes this with two domains, one that binds specific DNA …
Large-scale mapping and mutagenesis of human transcriptional effector domains
Human gene expression is regulated by more than 2,000 transcription factors and chromatin
regulators,. Effector domains within these proteins can activate or repress transcription …
regulators,. Effector domains within these proteins can activate or repress transcription …
Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities
Gene regulation plays a critical role in the cellular processes that underlie human health and
disease. The regulatory relationship between transcription factors (TFs), key regulators of …
disease. The regulatory relationship between transcription factors (TFs), key regulators of …
[HTML][HTML] Transcription activation is enhanced by multivalent interactions independent of phase separation
J Trojanowski, L Frank, A Rademacher, N Mücke… - Molecular cell, 2022 - cell.com
Transcription factors (TFs) consist of a DNA-binding domain and an activation domain (AD)
that are frequently considered to be independent and exchangeable modules. However …
that are frequently considered to be independent and exchangeable modules. However …
Multifunctional intrinsically disordered regions in transcription factors
M Már, K Nitsenko… - Chemistry–A European …, 2023 - Wiley Online Library
Eukaryotic transcription factors (TFs) are the final integrators of a complex molecular
feedback mechanism that interfaces with the genome, consolidating information for …
feedback mechanism that interfaces with the genome, consolidating information for …
[HTML][HTML] Readout of histone methylation by Trim24 locally restricts chromatin opening by p53
The genomic binding sites of the transcription factor (TF) and tumor suppressor p53 are
unusually diverse with regard to their chromatin features, including histone modifications …
unusually diverse with regard to their chromatin features, including histone modifications …
Transcription factors perform a 2-step search of the nucleus
MV Staller - Genetics, 2022 - academic.oup.com
Transcription factors regulate gene expression by binding to regulatory DNA and recruiting
regulatory protein complexes. The DNA-binding and protein-binding functions of …
regulatory protein complexes. The DNA-binding and protein-binding functions of …
High-throughput functional characterization of combinations of transcriptional activators and repressors
Despite growing knowledge of the functions of individual human transcriptional effector
domains, much less is understood about how multiple effector domains within the same …
domains, much less is understood about how multiple effector domains within the same …