[HTML][HTML] How computational models can help unlock biological systems
GW Brodland - Seminars in cell & developmental biology, 2015 - Elsevier
With computation models playing an ever increasing role in the advancement of science, it is
important that researchers understand what it means to model something; recognize the …
important that researchers understand what it means to model something; recognize the …
Mesoscale physical principles of collective cell organization
We review recent evidence showing that cell and tissue dynamics are governed by
mesoscale physical principles. These principles can be understood in terms of simple state …
mesoscale physical principles. These principles can be understood in terms of simple state …
[图书][B] The mathematics and mechanics of biological growth
A Goriely - 2017 - books.google.com
This monograph presents a general mathematical theory for biological growth. It provides
both a conceptual and a technical foundation for the understanding and analysis of …
both a conceptual and a technical foundation for the understanding and analysis of …
Testing the differential adhesion hypothesis across the epithelial− mesenchymal transition
S Pawlizak, AW Fritsch, S Grosser… - New Journal of …, 2015 - iopscience.iop.org
We analyze the mechanical properties of three epithelial/mesenchymal cell lines (MCF-10A,
MDA-MB-231, MDA-MB-436) that exhibit a shift in E-, N-and P-cadherin levels characteristic …
MDA-MB-231, MDA-MB-436) that exhibit a shift in E-, N-and P-cadherin levels characteristic …
Plateau Rayleigh instability simulation
R Mead-Hunter, AJC King, BJ Mullins - Langmuir, 2012 - ACS Publications
The well-known phenomena of Plateau–Rayleigh instability has been simulated using
computational fluid dynamics (CFD). The breakup of a liquid film into an array of droplets on …
computational fluid dynamics (CFD). The breakup of a liquid film into an array of droplets on …
Three-dimensional vertex model for simulating multicellular morphogenesis
During morphogenesis, various cellular activities are spatiotemporally coordinated on the
protein regulatory background to construct the complicated, three-dimensional (3D) …
protein regulatory background to construct the complicated, three-dimensional (3D) …
Differences in boundary behavior in the 3D vertex and Voronoi models
E Lawson-Keister, T Zhang, F Nazari… - PLoS computational …, 2024 - journals.plos.org
An important open question in the modeling of biological tissues is how to identify the right
scale for coarse-graining, or equivalently, the right number of degrees of freedom. For …
scale for coarse-graining, or equivalently, the right number of degrees of freedom. For …
Modeling Morphogenesis in silico and in vitro: TowardsQuantitative, Predictive, Cell-based Modeling
RMH Merks, P Koolwijk - Mathematical Modelling of Natural …, 2009 - cambridge.org
Cell-based, mathematical models help make sense of morphogenesis—ie cells organizing
into shape and pattern—by capturing cell behavior in simple, purely descriptive models. Cell …
into shape and pattern—by capturing cell behavior in simple, purely descriptive models. Cell …
p120ctn-mediated organ patterning precedes and determines pancreatic progenitor fate
P Nyeng, S Heilmann, ZM Löf-Öhlin, NF Pettersson… - Developmental cell, 2019 - cell.com
The mechanism of how organ shape emerges and specifies cell fate is not understood.
Pancreatic duct and endocrine lineages arise in a spatially distinct domain from the acinar …
Pancreatic duct and endocrine lineages arise in a spatially distinct domain from the acinar …
Inferring cellular forces from image stacks
JH Veldhuis, A Ehsandar, JL Maître… - … of the Royal …, 2017 - royalsocietypublishing.org
Although the importance of cellular forces to a wide range of embryogenesis and disease
processes is widely recognized, measuring these forces is challenging, especially in three …
processes is widely recognized, measuring these forces is challenging, especially in three …