Towards plant pangenomics
As an increasing number of genome sequences become available for a wide range of
species, there is a growing understanding that the genome of a single individual is …
species, there is a growing understanding that the genome of a single individual is …
Genomics and bioinformatics resources for crop improvement
K Mochida, K Shinozaki - Plant and Cell Physiology, 2010 - academic.oup.com
Recent remarkable innovations in platforms for omics-based research and application
development provide crucial resources to promote research in model and applied plant …
development provide crucial resources to promote research in model and applied plant …
[HTML][HTML] Endophytic Life Strategies Decoded by Genome and Transcriptome Analyses of the Mutualistic Root Symbiont Piriformospora indica
A Zuccaro, U Lahrmann, U Güldener, G Langen… - PLoS …, 2011 - journals.plos.org
Recent sequencing projects have provided deep insight into fungal lifestyle-associated
genomic adaptations. Here we report on the 25 Mb genome of the mutualistic root symbiont …
genomic adaptations. Here we report on the 25 Mb genome of the mutualistic root symbiont …
RegulonDB v8. 0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
This article summarizes our progress with RegulonDB (http://regulondb. ccg. unam. mx/)
during the past 2 years. We have kept up-to-date the knowledge from the published …
during the past 2 years. We have kept up-to-date the knowledge from the published …
[HTML][HTML] Biochemical and structural insights into the mechanisms of SARS coronavirus RNA ribose 2′-O-methylation by nsp16/nsp10 protein complex
Y Chen, C Su, M Ke, X Jin, L Xu, Z Zhang, A Wu… - PLoS …, 2011 - journals.plos.org
The 5′-cap structure is a distinct feature of eukaryotic mRNAs, and eukaryotic viruses
generally modify the 5′-end of viral RNAs to mimic cellular mRNA structure, which is …
generally modify the 5′-end of viral RNAs to mimic cellular mRNA structure, which is …
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
Pathway Tools is a production-quality software environment for creating a type of model-
organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc …
organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc …
The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease
M Shimoyama, J De Pons, GT Hayman… - Nucleic acids …, 2015 - academic.oup.com
Abstract The Rat Genome Database (RGD, http://rgd. mcw. edu) provides the most
comprehensive data repository and informatics platform related to the laboratory rat, one of …
comprehensive data repository and informatics platform related to the laboratory rat, one of …
[HTML][HTML] Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria
Armillaria species are both devastating forest pathogens and some of the largest terrestrial
organisms on Earth. They forage for hosts and achieve immense colony sizes via …
organisms on Earth. They forage for hosts and achieve immense colony sizes via …
The genome database for Rosaceae (GDR): year 10 update
S Jung, SP Ficklin, T Lee, CH Cheng… - Nucleic acids …, 2014 - academic.oup.com
Abstract The Genome Database for Rosaceae (GDR, http:/www. rosaceae. org), the long-
standing central repository and data mining resource for Rosaceae research, has been …
standing central repository and data mining resource for Rosaceae research, has been …
FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system
LJ Zhu, RG Christensen, M Kazemian… - Nucleic acids …, 2011 - academic.oup.com
Abstract FlyFactorSurvey (http://pgfe. umassmed. edu/TFDBS/) is a database of DNA binding
specificities for Drosophila transcription factors (TFs) primarily determined using the …
specificities for Drosophila transcription factors (TFs) primarily determined using the …