Application of targeted mass spectrometry in bottom-up proteomics for systems biology research

NP Manes, A Nita-Lazar - Journal of proteomics, 2018 - Elsevier
The enormous diversity of proteoforms produces tremendous complexity within cellular
proteomes, facilitates intricate networks of molecular interactions, and constitutes a …

Ultrasensitive detection of circulating LINE-1 ORF1p as a specific multicancer biomarker

MS Taylor, C Wu, PC Fridy, SJ Zhang, Y Senussi… - Cancer discovery, 2023 - AACR
Improved biomarkers are needed for early cancer detection, risk stratification, treatment
selection, and monitoring treatment response. Although proteins can be useful blood-based …

A human-like bile acid pool induced by deletion of hepatic Cyp2c70 modulates effects of FXR activation in mice [S]

JF de Boer, E Verkade, NL Mulder, HD de Vries… - Journal of Lipid …, 2020 - ASBMB
Bile acids (BAs) facilitate intestinal absorption of lipid-soluble nutrients and modulate
various metabolic pathways through the farnesoid X receptor (FXR) and Takeda G-protein …

Species-specific metabolic reprogramming in human and mouse microglia during inflammatory pathway induction

AM Sabogal-Guáqueta, A Marmolejo-Garza… - Nature …, 2023 - nature.com
Metabolic reprogramming is a hallmark of the immune cells in response to inflammatory
stimuli. This metabolic process involves a switch from oxidative phosphorylation (OXPHOS) …

Culturing Conditions Dictate the Composition and Pathways Enrichment of Human and Rat Perirenal Adipose-Derived Stromal Cells' Secretomes

E Pinheiro-Machado, MM Faas, BJ de Haan… - Stem Cell Reviews and …, 2024 - Springer
Understanding the impact of various culturing strategies on the secretome composition of
adipose-derived stromal cells (ASC) enhances their therapeutic potential. This study …

Full humanization of the glycolytic pathway in Saccharomyces cerevisiae

FJ Boonekamp, E Knibbe, MA Vieira-Lara, M Wijsman… - Cell Reports, 2022 - cell.com
Although transplantation of single genes in yeast plays a key role in elucidating gene
functionality in metazoans, technical challenges hamper humanization of full pathways and …

Assessment of sample preparation bias in mass spectrometry-based proteomics

F Klont, L Bras, JC Wolters, S Ongay… - Analytical …, 2018 - ACS Publications
For mass spectrometry-based proteomics, the selected sample preparation strategy is a key
determinant for information that will be obtained. However, the corresponding selection is …

Age and diet modulate the insulin-sensitizing effects of exercise: a tracer-based oral glucose tolerance test

MA Vieira-Lara, AC Reijne, S Koshian, J Ciapaite… - Diabetes, 2023 - Am Diabetes Assoc
Diet modulates the development of insulin resistance during aging. This includes tissue-
specific alterations in insulin signaling and mitochondrial function, which ultimately affect …

Age-related susceptibility to insulin resistance arises from a combination of CPT1B decline and lipid overload

MA Vieira-Lara, MB Dommerholt, W Zhang… - BMC biology, 2021 - Springer
Background The skeletal muscle plays a central role in glucose homeostasis through the
uptake of glucose from the extracellular medium in response to insulin. A number of factors …

Taking One Step Back in Familial Hypercholesterolemia: STAP1 Does Not Alter Plasma LDL (Low-Density Lipoprotein) Cholesterol in Mice and Humans

N Loaiza, ML Hartgers, LF Reeskamp… - … , and vascular biology, 2020 - Am Heart Assoc
Objective: STAP1, encoding for STAP1 (signal transducing adaptor family member 1), has
been reported as a candidate gene associated with familial hypercholesterolemia. Unlike …