On the evolutionary history of the twenty encoded amino acids

A Kirschning - Chemistry–A European Journal, 2022 - Wiley Online Library
Abstract α‐Amino acids are essential molecular constituents of life, twenty of which are
privileged because they are encoded by the ribosomal machinery. The question remains …

Engineering membrane architecture for biotechnological applications

Z Jin, A Vighi, Y Dong, JA Bureau, C Ignea - Biotechnology Advances, 2023 - Elsevier
Cellular membranes, predominantly described as a dynamic bilayer, are composed of
different lipids, transmembrane proteins, and carbohydrates. Most research on biological …

Hydrogen bonding in natural and unnatural base pairs—a local vibrational mode study

N Beiranvand, M Freindorf, E Kraka - Molecules, 2021 - mdpi.com
In this work hydrogen bonding in a diverse set of 36 unnatural and the three natural Watson
Crick base pairs adenine (A)–thymine (T), adenine (A)–uracil (U) and guanine (G)–cytosine …

The alanine world model for the development of the amino acid repertoire in protein biosynthesis

V Kubyshkin, N Budisa - International journal of molecular sciences, 2019 - mdpi.com
A central question in the evolution of the modern translation machinery is the origin and
chemical ethology of the amino acids prescribed by the genetic code. The RNA World …

Biochemistry of fluoroprolines: The prospect of making fluorine a bioelement

V Kubyshkin, R Davis, N Budisa - Beilstein journal of organic …, 2021 - beilstein-journals.org
Due to the heterocyclic structure and distinct conformational profile, proline is unique in the
repertoire of the 20 amino acids coded into proteins. Here, we summarize the biochemical …

[HTML][HTML] Experimental lipophilicity scale for coded and noncoded amino acid residues

V Kubyshkin - Organic & Biomolecular Chemistry, 2021 - pubs.rsc.org
Among other features, the polarity of amino acid residues is the key parameter for
understanding their role in proteins. The wide occurrence of protein modifications in nature …

Combating antimicrobial resistance with new-to-nature lanthipeptides created by genetic code expansion

HR Karbalaei-Heidari, N Budisa - Frontiers in Microbiology, 2020 - frontiersin.org
Due to the rapid emergence of multi-resistant bacterial strains in recent decades, the
commercially available effective antibiotics are becoming increasingly limited. On the other …

Enzymatic synthesis of mono-and trifluorinated alanine enantiomers expands the scope of fluorine biocatalysis

M Nieto-Domínguez, A Sako… - Communications …, 2024 - nature.com
Fluorinated amino acids serve as an entry point for establishing new-to-Nature chemistries
in biological systems, and novel methods are needed for the selective synthesis of these …

Xenobiology for the Biocontainment of Synthetic Organisms: Opportunities and Challenges

L Gómez-Tatay, JM Hernández-Andreu - Life, 2024 - pmc.ncbi.nlm.nih.gov
Since the development of recombinant DNA technologies, the need to establish biosafety
and biosecurity measures to control genetically modified organisms has been clear …

Promiscuous Installation of d-Amino Acids in Gene-Encoded Peptides

M Korneli, SW Fuchs, K Felder, C Ernst… - ACS Synthetic …, 2021 - ACS Publications
d-Amino acids can have major effects on the structure, proteolytic stability, and bioactivity of
peptides. Proteusin radical S-adenosyl methionine epimerases regioselectively install such …