Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices

S Alseekh, A Aharoni, Y Brotman, K Contrepois… - Nature …, 2021 - nature.com
Mass spectrometry-based metabolomics approaches can enable detection and
quantification of many thousands of metabolite features simultaneously. However …

Metabolite measurement: pitfalls to avoid and practices to follow

W Lu, X Su, MS Klein, IA Lewis, O Fiehn… - Annual review of …, 2017 - annualreviews.org
Metabolites are the small biological molecules involved in energy conversion and
biosynthesis. Studying metabolism is inherently challenging due to metabolites' reactivity …

Advanced biotechnology: Metabolically engineered cells for the bio‐based production of chemicals and fuels, materials, and health‐care products

J Becker, C Wittmann - Angewandte Chemie International …, 2015 - Wiley Online Library
Corynebacterium glutamicum, Escherichia coli, and Saccharomyces cerevisiae in particular,
have become established as important industrial workhorses in biotechnology. Recent years …

Analysis of intracellular metabolites from microorganisms: quenching and extraction protocols

FR Pinu, SG Villas-Boas, R Aggio - Metabolites, 2017 - mdpi.com
Sample preparation is one of the most important steps in metabolome analysis. The
challenges of determining microbial metabolome have been well discussed within the …

Implementation of liquid chromatography–high resolution mass spectrometry methods for untargeted metabolomic analyses of biological samples: A tutorial

J Pezzatti, J Boccard, S Codesido, Y Gagnebin… - Analytica chimica …, 2020 - Elsevier
Untargeted metabolomics is now widely recognized as a useful tool for exploring metabolic
changes taking place in biological systems under different conditions. By its nature, this is a …

Mammalian cell metabolomics: experimental design and sample preparation

Z León, JC García‐Cañaveras, MT Donato… - …, 2013 - Wiley Online Library
Metabolomics represents the global assessment of metabolites in a biological sample and
reports the closest information to the phenotype of the biological system under study …

Integration of microbial kinetics and fluid dynamics toward model‐driven scale‐up of industrial bioprocesses

G Wang, W Tang, J Xia, J Chu… - Engineering in Life …, 2015 - Wiley Online Library
Scale‐up of bioprocesses is hampered by open questions, mostly related to poor mixing and
mass transfer limitations. Concentration gradients of substrate, carbon dioxide, and oxygen …

Metabolomic strategies for aquaculture research: a primer

T Young, AC Alfaro - Reviews in Aquaculture, 2018 - Wiley Online Library
Metabolomics is a fast‐evolving field that provides qualitative and quantitative analyses of
metabolites within cells, tissues or biofluids. Recent applications of metabolomics …

Tandem mass spectrometry for measuring stable-isotope labeling

MR Antoniewicz - Current opinion in biotechnology, 2013 - Elsevier
Measuring metabolic rates by 13C-metabolic flux analysis (13C-MFA) is of central
importance for metabolic engineers and biomedical investigators. Enhanced knowledge of …

Metabolic Hijacking of Hexose Metabolism to Ascorbate Synthesis Is the Unifying Biochemical Basis of Murine Liver Fibrosis

D Beyoğlu, P Huang, D Skelton-Badlani, C Zong… - Cells, 2023 - mdpi.com
We wished to understand the metabolic reprogramming underlying liver fibrosis progression
in mice. Administration to male C57BL/6J mice of the hepatotoxins carbon tetrachloride …