Metabolic engineering: methodologies and applications

MJ Volk, VG Tran, SI Tan, S Mishra, Z Fatma… - Chemical …, 2022 - ACS Publications
Metabolic engineering aims to improve the production of economically valuable molecules
through the genetic manipulation of microbial metabolism. While the discipline is a little over …

[HTML][HTML] Automating the design-build-test-learn cycle towards next-generation bacterial cell factories

N Gurdo, DC Volke, D McCloskey, PI Nikel - New Biotechnology, 2023 - Elsevier
Automation is playing an increasingly significant role in synthetic biology. Groundbreaking
technologies, developed over the past 20 years, have enormously accelerated the …

The oxidative pentose phosphate pathway is the primary source of NADPH for lipid overproduction from glucose in Yarrowia lipolytica

TM Wasylenko, WS Ahn, G Stephanopoulos - Metabolic engineering, 2015 - Elsevier
Oleaginous microbes represent an attractive means of converting a diverse range of
feedstocks into oils that can be transesterified to biodiesel. However, the mechanism of lipid …

A roadmap for interpreting 13C metabolite labeling patterns from cells

JM Buescher, MR Antoniewicz, LG Boros… - Current opinion in …, 2015 - Elsevier
Highlights•13 C tracer analysis can be used to probe intracellular metabolism in
cells.•Steady state labeling patterns can quantify nutrient contributions.•Steady state labeling …

[HTML][HTML] From zero to hero–production of bio-based nylon from renewable resources using engineered Corynebacterium glutamicum

S Kind, S Neubauer, J Becker, M Yamamoto… - Metabolic …, 2014 - Elsevier
Polyamides are important industrial polymers. Currently, they are produced exclusively from
petrochemical monomers. Herein, we report the production of a novel bio-nylon, PA5. 10 …

13C-based metabolic flux analysis

N Zamboni, SM Fendt, M Rühl, U Sauer - Nature protocols, 2009 - nature.com
Stable isotope, and in particular 13C-based flux analysis, is the exclusive approach to
experimentally quantify the integrated responses of metabolic networks. Here we describe a …

Metabolic networks in motion: 13C‐based flux analysis

U Sauer - Molecular systems biology, 2006 - embopress.org
Many properties of complex networks cannot be understood from monitoring the
components—not even when comprehensively monitoring all protein or metabolite …

Metabolic fluxes and metabolic engineering

G Stephanopoulos - Metabolic engineering, 1999 - Elsevier
Metabolic engineering is the directed improvement of cellular properties through the
modification of specific biochemical reactions or the introduction of new ones, with the use of …

The PEP—pyruvate—oxaloacetate node as the switch point for carbon flux distribution in bacteria: We dedicate this paper to Rudolf K. Thauer, Director of the Max …

U Sauer, BJ Eikmanns - FEMS microbiology reviews, 2005 - academic.oup.com
In many organisms, metabolite interconversion at the phosphoenolpyruvate (PEP)–pyruvate–
oxaloacetate node involves a structurally entangled set of reactions that interconnects the …

Metabolic Engineering of Saccharomyces cerevisiae

S Ostergaard, L Olsson, J Nielsen - Microbiology and molecular …, 2000 - Am Soc Microbiol
Comprehensive knowledge regarding Saccharomyces cerevisiae has accumulated over
time, and today S. cerevisiae serves as a widley used biotechnological production organism …