De novo domestication: an alternative route toward new crops for the future

AR Fernie, J Yan - Molecular plant, 2019 - cell.com
Current global agricultural production must feed over 7 billion people. However, productivity
varies greatly across the globe and is under threat from both increased competitions for land …

Progress in soybean functional genomics over the past decade

M Zhang, S Liu, Z Wang, Y Yuan… - Plant Biotechnology …, 2022 - Wiley Online Library
Soybean is one of the most important oilseed and fodder crops. Benefiting from the efforts of
soybean breeders and the development of breeding technology, large number of …

DNA methylation profiles in cancer diagnosis and therapeutics

Y Pan, G Liu, F Zhou, B Su, Y Li - Clinical and experimental medicine, 2018 - Springer
Cancer initiation and proliferation is regulated by both epigenetic and genetic events with
epigenetic modifications being increasingly identified as important targets for cancer …

Impact of transposable elements on polyploid plant genomes

CM Vicient, JM Casacuberta - Annals of Botany, 2017 - academic.oup.com
Background The growing wealth of knowledge on whole-plant genome sequences is
highlighting the key role of transposable elements (TEs) in plant evolution, as a driver of …

Transposable element influences on gene expression in plants

CD Hirsch, NM Springer - Biochimica et Biophysica Acta (BBA)-Gene …, 2017 - Elsevier
Transposable elements (TEs) comprise a major portion of many plant genomes and bursts
of TE movements cause novel genomic variation within species. In order to maintain proper …

Interaction and regulation of carbon, nitrogen, and phosphorus metabolisms in root nodules of legumes

A Liu, CA Contador, K Fan, HM Lam - Frontiers in Plant Science, 2018 - frontiersin.org
Members of the plant family Leguminosae (Fabaceae) are unique in that they have evolved
a symbiotic relationship with rhizobia (a group of soil bacteria that can fix atmospheric …

Epigenomic and functional analyses reveal roles of epialleles in the loss of photoperiod sensitivity during domestication of allotetraploid cottons

Q Song, T Zhang, DM Stelly, ZJ Chen - Genome biology, 2017 - Springer
Background Polyploidy is a pervasive evolutionary feature of all flowering plants and some
animals, leading to genetic and epigenetic changes that affect gene expression and …

A new decade and new data at SoyBase, the USDA-ARS soybean genetics and genomics database

AV Brown, SI Conners, W Huang… - Nucleic Acids …, 2021 - academic.oup.com
SoyBase, a USDA genetic and genomics database, holds professionally curated soybean
genetic and genomic data, which is integrated and made accessible to researchers and …

Altered chromatin architecture and gene expression during polyploidization and domestication of soybean

L Wang, G Jia, X Jiang, S Cao, ZJ Chen… - The Plant Cell, 2021 - academic.oup.com
Polyploidy or whole-genome duplication (WGD) is widespread in plants and is a key driver
of evolution and speciation, accompanied by rapid and dynamic changes in genomic …

DNA methylation: toward crop disease resistance improvement

S Tirnaz, J Batley - Trends in plant science, 2019 - cell.com
Crop diseases, in conjunction with climate change, are a major threat to global crop
production. DNA methylation is an epigenetic mark and is involved in plants' biological …