The K = 2 conundrum
Assessments of population genetic structure have become an increasing focus as they can
provide valuable insight into patterns of migration and gene flow. structure, the most highly …
provide valuable insight into patterns of migration and gene flow. structure, the most highly …
[HTML][HTML] Conservation of biodiversity in the genomics era
MA Supple, B Shapiro - Genome biology, 2018 - Springer
Abstract “Conservation genomics” encompasses the idea that genome-scale data will
improve the capacity of resource managers to protect species. Although genetic approaches …
improve the capacity of resource managers to protect species. Although genetic approaches …
Panning for gold:'model-X'knockoffs for high dimensional controlled variable selection
Many contemporary large-scale applications involve building interpretable models linking a
large set of potential covariates to a response in a non-linear fashion, such as when the …
large set of potential covariates to a response in a non-linear fashion, such as when the …
Minor allele frequency thresholds strongly affect population structure inference with genomic data sets
E Linck, CJ Battey - Molecular Ecology Resources, 2019 - Wiley Online Library
A common method of minimizing errors in large DNA sequence data sets is to drop variable
sites with a minor allele frequency (MAF) below some specified threshold. Although …
sites with a minor allele frequency (MAF) below some specified threshold. Although …
[HTML][HTML] RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference
Local-ancestry inference is an important step in the genetic analysis of fully sequenced
human genomes. Current methods can only detect continental-level ancestry (ie, European …
human genomes. Current methods can only detect continental-level ancestry (ie, European …
Fast model-based estimation of ancestry in unrelated individuals
Population stratification has long been recognized as a confounding factor in genetic
association studies. Estimated ancestries, derived from multi-locus genotype data, can be …
association studies. Estimated ancestries, derived from multi-locus genotype data, can be …
[HTML][HTML] Inference of population structure using dense haplotype data
The advent of genome-wide dense variation data provides an opportunity to investigate
ancestry in unprecedented detail, but presents new statistical challenges. We propose a …
ancestry in unprecedented detail, but presents new statistical challenges. We propose a …
Planning cancer control in Latin America and the Caribbean
PE Goss, BL Lee, T Badovinac-Crnjevic… - The lancet …, 2013 - thelancet.com
Non-communicable diseases, including cancer, are overtaking infectious disease as the
leading health-care threat in middle-income and low-income countries. Latin American and …
leading health-care threat in middle-income and low-income countries. Latin American and …
Genes mirror geography within Europe
Understanding the genetic structure of human populations is of fundamental interest to
medical, forensic and anthropological sciences. Advances in high-throughput genotyping …
medical, forensic and anthropological sciences. Advances in high-throughput genotyping …
Inferring admixture histories of human populations using linkage disequilibrium
Long-range migrations and the resulting admixtures between populations have been
important forces shaping human genetic diversity. Most existing methods for detecting and …
important forces shaping human genetic diversity. Most existing methods for detecting and …