The K = 2 conundrum

JK Janes, JM Miller, JR Dupuis… - Molecular …, 2017 - Wiley Online Library
Assessments of population genetic structure have become an increasing focus as they can
provide valuable insight into patterns of migration and gene flow. structure, the most highly …

[HTML][HTML] Conservation of biodiversity in the genomics era

MA Supple, B Shapiro - Genome biology, 2018 - Springer
Abstract “Conservation genomics” encompasses the idea that genome-scale data will
improve the capacity of resource managers to protect species. Although genetic approaches …

Panning for gold:'model-X'knockoffs for high dimensional controlled variable selection

E Candes, Y Fan, L Janson, J Lv - Journal of the Royal Statistical …, 2018 - academic.oup.com
Many contemporary large-scale applications involve building interpretable models linking a
large set of potential covariates to a response in a non-linear fashion, such as when the …

Minor allele frequency thresholds strongly affect population structure inference with genomic data sets

E Linck, CJ Battey - Molecular Ecology Resources, 2019 - Wiley Online Library
A common method of minimizing errors in large DNA sequence data sets is to drop variable
sites with a minor allele frequency (MAF) below some specified threshold. Although …

[HTML][HTML] RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference

BK Maples, S Gravel, EE Kenny… - The American Journal of …, 2013 - cell.com
Local-ancestry inference is an important step in the genetic analysis of fully sequenced
human genomes. Current methods can only detect continental-level ancestry (ie, European …

Fast model-based estimation of ancestry in unrelated individuals

DH Alexander, J Novembre, K Lange - Genome research, 2009 - genome.cshlp.org
Population stratification has long been recognized as a confounding factor in genetic
association studies. Estimated ancestries, derived from multi-locus genotype data, can be …

[HTML][HTML] Inference of population structure using dense haplotype data

DJ Lawson, G Hellenthal, S Myers, D Falush - PLoS genetics, 2012 - journals.plos.org
The advent of genome-wide dense variation data provides an opportunity to investigate
ancestry in unprecedented detail, but presents new statistical challenges. We propose a …

Planning cancer control in Latin America and the Caribbean

PE Goss, BL Lee, T Badovinac-Crnjevic… - The lancet …, 2013 - thelancet.com
Non-communicable diseases, including cancer, are overtaking infectious disease as the
leading health-care threat in middle-income and low-income countries. Latin American and …

Genes mirror geography within Europe

J Novembre, T Johnson, K Bryc, Z Kutalik, AR Boyko… - Nature, 2008 - nature.com
Understanding the genetic structure of human populations is of fundamental interest to
medical, forensic and anthropological sciences. Advances in high-throughput genotyping …

Inferring admixture histories of human populations using linkage disequilibrium

PR Loh, M Lipson, N Patterson, P Moorjani… - Genetics, 2013 - academic.oup.com
Long-range migrations and the resulting admixtures between populations have been
important forces shaping human genetic diversity. Most existing methods for detecting and …