Knowledge-guided statistical learning methods for analysis of high-dimensional-omics data in precision oncology
High-dimensional-omics data such as genomic, transcriptomic, and metabolomic data offer
great promise in advancing precision medicine. In particular, such data have enabled the …
great promise in advancing precision medicine. In particular, such data have enabled the …
[PDF][PDF] From controlled to undisciplined data: Estimating causal effects in the era of data science using a potential outcome framework
This article discusses the fundamental principles of causal inference–the area of statistics
that estimates the effect of specific occurrences, treatments, interventions, and exposures on …
that estimates the effect of specific occurrences, treatments, interventions, and exposures on …
Integrative analysis of multi-omics and imaging data with incorporation of biological information via structural Bayesian factor analysis
Motivation With the rapid development of modern technologies, massive data are available
for the systematic study of Alzheimer's disease (AD). Though many existing AD studies …
for the systematic study of Alzheimer's disease (AD). Though many existing AD studies …
Graph-Guided Bayesian Factor Model for Integrative Analysis of Multi-modal Data with Noisy Network Information
There is a growing body of literature on factor analysis that can capture individual and
shared structures in multi-modal data. However, few of these approaches incorporate …
shared structures in multi-modal data. However, few of these approaches incorporate …
Integrative Bayesian analysis of brain functional networks incorporating anatomical knowledge
IA Higgins, S Kundu, Y Guo - Neuroimage, 2018 - Elsevier
Recently, there has been increased interest in fusing multimodal imaging to better
understand brain organization by integrating information on both brain structure and …
understand brain organization by integrating information on both brain structure and …
Single-cell biclustering for cell-specific transcriptomic perturbation detection in AD progression
The pathogenesis of Alzheimer disease (AD) involves complex gene regulatory changes
across different cell types. To help decipher this complexity, we introduce single-cell …
across different cell types. To help decipher this complexity, we introduce single-cell …
Incorporating graph information in Bayesian factor analysis with robust and adaptive shrinkage priors
There has been an increasing interest in decomposing high-dimensional multi-omics data
into a product of low-rank and sparse matrices for the purpose of dimension reduction and …
into a product of low-rank and sparse matrices for the purpose of dimension reduction and …
Accounting for network noise in graph-guided Bayesian modeling of structured high-dimensional data
There is a growing body of literature on knowledge-guided statistical learning methods for
analysis of structured high-dimensional data (such as genomic and transcriptomic data) that …
analysis of structured high-dimensional data (such as genomic and transcriptomic data) that …
[HTML][HTML] Bayesian network marker selection via the thresholded graph Laplacian Gaussian prior
Selecting informative nodes over large-scale networks becomes increasingly important in
many research areas. Most existing methods focus on the local network structure and incur …
many research areas. Most existing methods focus on the local network structure and incur …
Integrative Bayesian tensor regression for imaging genetics applications
Identifying biomarkers for Alzheimer's disease with a goal of early detection is a fundamental
problem in clinical research. Both medical imaging and genetics have contributed …
problem in clinical research. Both medical imaging and genetics have contributed …