RNA-Seq technology and its application in fish transcriptomics

X Qian, Y Ba, Q Zhuang, G Zhong - Omics: a journal of integrative …, 2014 - liebertpub.com
High-throughput sequencing technologies, also known as next-generation sequencing
(NGS) technologies, have revolutionized the way that genomic research is advancing. In …

Columnaris disease in fish: a review with emphasis on bacterium-host interactions

AM Declercq, F Haesebrouck, W Van den Broeck… - Veterinary …, 2013 - Springer
Flavobacterium columnare (F. columnare) is the causative agent of columnaris disease. This
bacterium affects both cultured and wild freshwater fish including many susceptible …

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

Z Liu, S Liu, J Yao, L Bao, J Zhang, Y Li, C Jiang… - Nature …, 2016 - nature.com
Catfish represent 12% of teleost or 6.3% of all vertebrate species, and are of enormous
economic value. Here we report a high-quality reference genome sequence of channel …

Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research

Aquaculture Genomics, Genetics and Breeding … - BMC genomics, 2017 - Springer
Advancing the production efficiency and profitability of aquaculture is dependent upon the
ability to utilize a diverse array of genetic resources. The ultimate goals of aquaculture …

Dissolved oxygen and aeration in ictalurid catfish aquaculture

CE Boyd, EL Torrans, CS Tucker - Journal of the World …, 2018 - Wiley Online Library
Feed‐based production of ictalurid catfish in ponds is the largest aquaculture sector in the
USA. Feed has an oxygen demand, and increases carbon dioxide, ammonia nitrogen, and …

Transcriptome analysis based on RNA-Seq in understanding pathogenic mechanisms of diseases and the immune system of fish: a comprehensive review

A Sudhagar, G Kumar, M El-Matbouli - International journal of molecular …, 2018 - mdpi.com
In recent years, with the advent of next-generation sequencing along with the development
of various bioinformatics tools, RNA sequencing (RNA-Seq)-based transcriptome analysis …

Applying genetic technologies to combat infectious diseases in aquaculture

NA Robinson, D Robledo, L Sveen… - Reviews in …, 2023 - Wiley Online Library
Disease and parasitism cause major welfare, environmental and economic concerns for
global aquaculture. In this review, we examine the status and potential of technologies that …

RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish

S Liu, X Wang, F Sun, J Zhang, J Feng… - Physiological …, 2013 - journals.physiology.org
Temperature is one of the most prominent abiotic factors affecting ectotherms. Most fish
species, as ectotherms, have extraordinary ability to deal with a wide range of temperature …

A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance

X Geng, J Sha, S Liu, L Bao, J Zhang, R Wang, J Yao… - BMC genomics, 2015 - Springer
Background Columnaris causes severe mortalities among many different wild and cultured
freshwater fish species, but understanding of host resistance is lacking. Catfish, the primary …

Transcriptome analysis revealed changes of multiple genes involved in immunity in Cynoglossus semilaevis during Vibrio anguillarum infection

X Zhang, S Wang, S Chen, Y Chen, Y Liu… - Fish & shellfish …, 2015 - Elsevier
Half-smooth tongue sole (Cynoglossus semilaevis) is one of the most valuable marine
aquatic species in Northern China. Given to the rapid development of aquaculture industry …