Phage diversity, genomics and phylogeny

MB Dion, F Oechslin, S Moineau - Nature Reviews Microbiology, 2020 - nature.com
Recent advances in viral metagenomics have enabled the rapid discovery of an
unprecedented catalogue of phages in numerous environments, from the human gut to the …

[HTML][HTML] Origins and evolution of viruses of eukaryotes: The ultimate modularity

EV Koonin, VV Dolja, M Krupovic - Virology, 2015 - Elsevier
Viruses and other selfish genetic elements are dominant entities in the biosphere, with
respect to both physical abundance and genetic diversity. Various selfish elements …

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

S Roux, JR Brum, BE Dutilh, S Sunagawa… - Nature, 2016 - nature.com
Ocean microbes drive biogeochemical cycling on a global scale. However, this cycling is
constrained by viruses that affect community composition, metabolic activity, and …

VICTOR: genome-based phylogeny and classification of prokaryotic viruses

JP Meier-Kolthoff, M Göker - Bioinformatics, 2017 - academic.oup.com
Motivation Bacterial and archaeal viruses are crucial for global biogeochemical cycles and
might well be game-changing therapeutic agents in the fight against multi-resistant …

[HTML][HTML] Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes

S Roux, M Krupovic, RA Daly, AL Borges… - Nature …, 2019 - nature.com
Bacteriophages from the Inoviridae family (inoviruses) are characterized by their unique
morphology, genome content and infection cycle. One of the most striking features of …

[HTML][HTML] Phage family classification under Caudoviricetes: A review of current tools using the latest ICTV classification framework

Y Zhu, J Shang, C Peng, Y Sun - Frontiers in microbiology, 2022 - frontiersin.org
Bacteriophages, which are viruses infecting bacteria, are the most ubiquitous and diverse
entities in the biosphere. There is accumulating evidence revealing their important roles in …

Multiple origins of viral capsid proteins from cellular ancestors

M Krupovic, EV Koonin - Proceedings of the National …, 2017 - National Acad Sciences
Viruses are the most abundant biological entities on earth and show remarkable diversity of
genome sequences, replication and expression strategies, and virion structures …

[HTML][HTML] Engineered bacteriophage therapeutics: rationale, challenges and future

M Łobocka, K Dąbrowska, A Górski - BioDrugs, 2021 - Springer
The current problems with increasing bacterial resistance to antibacterial therapies, resulting
in a growing frequency of incurable bacterial infections, necessitates the acceleration of …

[HTML][HTML] Jumbo bacteriophages: an overview

Y Yuan, M Gao - Frontiers in microbiology, 2017 - frontiersin.org
Tailed bacteriophages with genomes larger than 200 kbp are classified as Jumbo phages,
and are rarely isolated by conventional methods. These phages are designated “jumbo” …

CRISPRTarget: bioinformatic prediction and analysis of crRNA targets

A Biswas, JN Gagnon, SJJ Brouns, PC Fineran… - RNA biology, 2013 - Taylor & Francis
The bacterial and archaeal CRISPR/Cas adaptive immune system targets specific
protospacer nucleotide sequences in invading organisms. This requires base pairing …