Acute kidney injury in critically ill patients with COVID-19

P Gabarre, G Dumas, T Dupont, M Darmon… - Intensive care …, 2020 - Springer
Acute kidney injury (AKI) has been reported in up to 25% of critically-ill patients with SARS-
CoV-2 infection, especially in those with underlying comorbidities. AKI is associated with …

Multi-omics integration in the age of million single-cell data

Z Miao, BD Humphreys, AP McMahon… - Nature Reviews …, 2021 - nature.com
An explosion in single-cell technologies has revealed a previously underappreciated
heterogeneity of cell types and novel cell-state associations with sex, disease, development …

High-resolution alignment of single-cell and spatial transcriptomes with CytoSPACE

MR Vahid, EL Brown, CB Steen, W Zhang… - Nature …, 2023 - nature.com
Recent studies have emphasized the importance of single-cell spatial biology, yet available
assays for spatial transcriptomics have limited gene recovery or low spatial resolution. Here …

An atlas of healthy and injured cell states and niches in the human kidney

BB Lake, R Menon, S Winfree, Q Hu, R Melo Ferreira… - Nature, 2023 - nature.com
Understanding kidney disease relies on defining the complexity of cell types and states, their
associated molecular profiles and interactions within tissue neighbourhoods. Here we …

Giotto: a toolbox for integrative analysis and visualization of spatial expression data

R Dries, Q Zhu, R Dong, CHL Eng, H Li, K Liu, Y Fu… - Genome biology, 2021 - Springer
Spatial transcriptomic and proteomic technologies have provided new opportunities to
investigate cells in their native microenvironment. Here we present Giotto, a comprehensive …

Spatially resolved isotope tracing reveals tissue metabolic activity

L Wang, X Xing, X Zeng, SRE Jackson, T TeSlaa… - Nature …, 2022 - nature.com
Isotope tracing has helped to determine the metabolic activities of organs. Methods to probe
metabolic heterogeneity within organs are less developed. We couple stable-isotope …

Single-nuclear transcriptomics reveals diversity of proximal tubule cell states in a dynamic response to acute kidney injury

LMS Gerhardt, J Liu, K Koppitch… - Proceedings of the …, 2021 - National Acad Sciences
Acute kidney injury (AKI), commonly caused by ischemia, sepsis, or nephrotoxic insult, is
associated with increased mortality and a heightened risk of chronic kidney disease (CKD) …

Spatial charting of single-cell transcriptomes in tissues

R Wei, S He, S Bai, E Sei, M Hu, A Thompson… - Nature …, 2022 - nature.com
Single-cell RNA sequencing methods can profile the transcriptomes of single cells but
cannot preserve spatial information. Conversely, spatial transcriptomics assays can profile …

Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets

Z Miao, MS Balzer, Z Ma, H Liu, J Wu… - Nature …, 2021 - nature.com
Determining the epigenetic program that generates unique cell types in the kidney is critical
for understanding cell-type heterogeneity during tissue homeostasis and injury response …

Independent origins of fetal liver haematopoietic stem and progenitor cells

T Yokomizo, T Ideue, S Morino-Koga, CY Tham, T Sato… - Nature, 2022 - nature.com
Self-renewal and differentiation are tightly controlled to maintain haematopoietic stem cell
(HSC) homeostasis in the adult bone marrow,. During fetal development, expansion of …