SARS‐CoV‐2, the pandemic coronavirus: Molecular and structural insights
SB Kadam, GS Sukhramani, P Bishnoi… - Journal of basic …, 2021 - Wiley Online Library
The outbreak of a novel coronavirus associated with acute respiratory disease, called
COVID‐19, marked the introduction of the third spillover of an animal coronavirus (CoV) to …
COVID‐19, marked the introduction of the third spillover of an animal coronavirus (CoV) to …
Determinants of translation efficiency and accuracy
Proper functioning of biological cells requires that the process of protein expression be
carried out with high efficiency and fidelity. Given an amino‐acid sequence of a protein …
carried out with high efficiency and fidelity. Given an amino‐acid sequence of a protein …
Cross‐species transmission of the newly identified coronavirus 2019‐nCoV
W Ji, W Wang, X Zhao, J Zai, X Li - Journal of medical virology, 2020 - Wiley Online Library
The current outbreak of viral pneumonia in the city of Wuhan, China, was caused by a novel
coronavirus designated 2019‐nCoV by the World Health Organization, as determined by …
coronavirus designated 2019‐nCoV by the World Health Organization, as determined by …
From SARS and MERS CoVs to SARS‐CoV‐2: Moving toward more biased codon usage in viral structural and nonstructural genes
Background Severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) is an
emerging disease with fatal outcomes. In this study, a fundamental knowledge gap question …
emerging disease with fatal outcomes. In this study, a fundamental knowledge gap question …
A new and updated resource for codon usage tables
J Athey, A Alexaki, E Osipova, A Rostovtsev… - BMC …, 2017 - Springer
Background Due to the degeneracy of the genetic code, most amino acids can be encoded
by multiple synonymous codons. Synonymous codons naturally occur with different …
by multiple synonymous codons. Synonymous codons naturally occur with different …
PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
S Akhter, RK Aziz, RA Edwards - Nucleic acids research, 2012 - academic.oup.com
Prophages are phages in lysogeny that are integrated into, and replicated as part of, the
host bacterial genome. These mobile elements can have tremendous impact on their …
host bacterial genome. These mobile elements can have tremendous impact on their …
Clinical sequencing uncovers origins and evolution of Lassa virus
KG Andersen, BJ Shapiro, CB Matranga, R Sealfon… - Cell, 2015 - cell.com
Summary The 2013–2015 West African epidemic of Ebola virus disease (EVD) reminds us
of how little is known about biosafety level 4 viruses. Like Ebola virus, Lassa virus (LASV) …
of how little is known about biosafety level 4 viruses. Like Ebola virus, Lassa virus (LASV) …
ViralZone: a knowledge resource to understand virus diversity
C Hulo, E De Castro, P Masson… - Nucleic acids …, 2011 - academic.oup.com
The molecular diversity of viruses complicates the interpretation of viral genomic and
proteomic data. To make sense of viral gene functions, investigators must be familiar with …
proteomic data. To make sense of viral gene functions, investigators must be familiar with …
MARVEL, a tool for prediction of bacteriophage sequences in metagenomic bins
Here we present MARVEL, a tool for prediction of double-stranded DNA bacteriophage
sequences in metagenomic bins. MARVEL uses a random forest machine learning …
sequences in metagenomic bins. MARVEL uses a random forest machine learning …
Deeply altered genome architecture in the endoparasitic flowering plant Sapria himalayana Griff.(Rafflesiaceae)
Summary Despite more than 2,000-fold variation in genome size, key features of genome
architecture are largely conserved across angiosperms. Parasitic plants have elucidated the …
architecture are largely conserved across angiosperms. Parasitic plants have elucidated the …