RNA-Seq differential expression analysis: An extended review and a software tool
The correct identification of differentially expressed genes (DEGs) between specific
conditions is a key in the understanding phenotypic variation. High-throughput transcriptome …
conditions is a key in the understanding phenotypic variation. High-throughput transcriptome …
What is speciation genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species
CR Campbell, JW Poelstra… - Biological Journal of the …, 2018 - academic.oup.com
As is true of virtually every realm of the biological sciences, our understanding of speciation
is increasingly informed by the genomic revolution of the past decade. Investigators can ask …
is increasingly informed by the genomic revolution of the past decade. Investigators can ask …
[HTML][HTML] Benchmarking of Nanopore R10. 4 and R9. 4.1 flow cells in single-cell whole-genome amplification and whole-genome shotgun sequencing
Third-generation sequencing can be used in human cancer genomics and epigenomic
research. Oxford Nanopore Technologies (ONT) recently released R10. 4 flow cell, which …
research. Oxford Nanopore Technologies (ONT) recently released R10. 4 flow cell, which …
Transcriptomics signature from next-generation sequencing data reveals new transcriptomic biomarkers related to prostate cancer
A Alkhateeb, I Rezaeian, S Singireddy… - Cancer …, 2019 - journals.sagepub.com
Prostate cancer is one of the most common types of cancer among Canadian men. Next-
generation sequencing using RNA-Seq provides large amounts of data that may reveal …
generation sequencing using RNA-Seq provides large amounts of data that may reveal …
Generative adversarial networks for creating synthetic nucleic acid sequences of cat genome
Nucleic acids are the basic units of deoxyribonucleic acid (DNA) sequencing. Every
organism demonstrates different DNA sequences with specific nucleotides. It reveals the …
organism demonstrates different DNA sequences with specific nucleotides. It reveals the …
Genome-wide analyses of member identification, expression pattern, and protein–protein interaction of EPF/EPFL gene family in Gossypium
P Li, Z Zhao, W Wang, T Wang, N Hu, Y Wei, Z Sun… - BMC Plant …, 2024 - Springer
Background Epidermal patterning factor/-like (EPF/EPFL) gene family encodes a class of
cysteine-rich secretory peptides, which are widelyfound in terrestrial plants. Multiple studies …
cysteine-rich secretory peptides, which are widelyfound in terrestrial plants. Multiple studies …
[HTML][HTML] A fast algorithm for constructing suffix arrays for DNA alphabets
The continuous improvement of sequencing technologies has been paralleled by the
development of efficient algorithms and data structures for sequencing data analysis and …
development of efficient algorithms and data structures for sequencing data analysis and …
A comparison of RNA-Seq data preprocessing pipelines for transcriptomic predictions across independent studies
R Van, D Alvarez, T Mize, S Gannavarapu… - BMC …, 2024 - Springer
Background RNA sequencing combined with machine learning techniques has provided a
modern approach to the molecular classification of cancer. Class predictors, reflecting the …
modern approach to the molecular classification of cancer. Class predictors, reflecting the …
Music of metagenomics—A review of its applications, analysis pipeline, and associated tools
This humble effort highlights the intricate details of metagenomics in a simple, poetic, and
rhythmic way. The paper enforces the significance of the research area, provides details …
rhythmic way. The paper enforces the significance of the research area, provides details …
Deep learning in multi-omics data integration in cancer diagnostic
Human cell is a complex of interacting small molecules which work together to perform daily
tasks of the cell. The reading and the measurements of this different molecules are called …
tasks of the cell. The reading and the measurements of this different molecules are called …