CHARMM36m: an improved force field for folded and intrinsically disordered proteins
The all-atom additive CHARMM36 protein force field is widely used in molecular modeling
and simulations. We present its refinement, CHARMM36m (http://mackerell. umaryland …
and simulations. We present its refinement, CHARMM36m (http://mackerell. umaryland …
CHARMM36 all‐atom additive protein force field: Validation based on comparison to NMR data
J Huang, AD MacKerell Jr - Journal of computational chemistry, 2013 - Wiley Online Library
Protein structure and dynamics can be characterized on the atomistic level with both nuclear
magnetic resonance (NMR) experiments and molecular dynamics (MD) simulations. Here …
magnetic resonance (NMR) experiments and molecular dynamics (MD) simulations. Here …
Nature and strength of sulfur-centred hydrogen bonds: laser spectroscopic investigations in the gas phase and quantum-chemical calculations
HS Biswal, S Bhattacharyya… - … Reviews in Physical …, 2015 - Taylor & Francis
The importance of Sulfur centred hydrogen bonds (SCHBs) cannot be underestimated given
the current day knowledge of its non-covalent interactions prevalent in many biopolymers as …
the current day knowledge of its non-covalent interactions prevalent in many biopolymers as …
Covalent Organic Framework Cladding on Peptide-Amphiphile-Based Biomimetic Catalysts
Peptide-based biomimetic catalysts are promising materials for efficient catalytic activity in
various biochemical transformations. However, their lack of operational stability and fragile …
various biochemical transformations. However, their lack of operational stability and fragile …
pH-dependent random coil 1H, 13C, and 15N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements
G Platzer, M Okon, LP McIntosh - Journal of biomolecular NMR, 2014 - Springer
The p K a values and charge states of ionizable residues in polypeptides and proteins are
frequently determined via NMR-monitored pH titrations. To aid the interpretation of the …
frequently determined via NMR-monitored pH titrations. To aid the interpretation of the …
A spectroscopic overview of intramolecular hydrogen bonds of NH… O, S, N type
PE Hansen - Molecules, 2021 - mdpi.com
Intramolecular NH… O, S, N interactions in non-tautomeric systems are reviewed in a broad
range of compounds covering a variety of NH donors and hydrogen bond acceptors. 1H …
range of compounds covering a variety of NH donors and hydrogen bond acceptors. 1H …
Comparison of structure determination methods for intrinsically disordered amyloid-β peptides
Intrinsically disordered proteins (IDPs) represent a new frontier in structural biology since the
primary characteristic of IDPs is that structures need to be characterized as diverse …
primary characteristic of IDPs is that structures need to be characterized as diverse …
Direct observation of the ion-pair dynamics at a protein–DNA interface by NMR spectroscopy
KM Anderson, A Esadze, M Manoharan… - Journal of the …, 2013 - ACS Publications
Ion pairing is one of the most fundamental chemical interactions and is essential for
molecular recognition by biological macromolecules. From an experimental standpoint, very …
molecular recognition by biological macromolecules. From an experimental standpoint, very …
Entropic enhancement of protein-DNA affinity by oxygen-to-sulfur substitution in DNA phosphate
Dithioation of DNA phosphate is known to enhance binding affinities, at least for some
proteins. We mechanistically characterized this phenomenon for the Antennapedia …
proteins. We mechanistically characterized this phenomenon for the Antennapedia …
Physicochemical properties of ion pairs of biological macromolecules
Ion pairs (also known as salt bridges) of electrostatically interacting cationic and anionic
moieties are important for proteins and nucleic acids to perform their function. Although …
moieties are important for proteins and nucleic acids to perform their function. Although …