Computer simulation of molecular dynamics: methodology, applications, and perspectives in chemistry

WF Van Gunsteren… - … International Edition in …, 1990 - Wiley Online Library
During recent decades it has become feasible to simulate the dynamics of molecular
systems on a computer. The method of molecular dynamics (MD) solves Newton's equations …

[HTML][HTML] Protein structure determination in solution by NMR spectroscopy.

K Wüthrich - Journal of Biological Chemistry, 1990 - Elsevier
The introduction of nuclear magnetic resonance (NMR) spectroscopy as a second method
for protein structure determination at atomic resolution, in addition to x-ray diffraction in …

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

RA Laskowski, JAC Rullmann, MW MacArthur… - Journal of biomolecular …, 1996 - Springer
Summary The AQUA and PROCHECK-NMR programs provide a means of validating the
geometry and restraint violations of an ensemble of protein structures solved by solution …

Torsion angle dynamics for NMR structure calculation with the new program DYANA

P Güntert, C Mumenthaler, K Wüthrich - Journal of molecular biology, 1997 - Elsevier
The new program Dyana (DYnamics Algorithm for Nmr Applications) for efficient calculation
of three-dimensional protein and nucleic acid structures from distance constraints and …

The GROMOS biomolecular simulation program package

WRP Scott, PH Hünenberger, IG Tironi… - The Journal of …, 1999 - ACS Publications
We present the newest version of the GROningen MOlecular Simulation program package,
GROMOS96. GROMOS96 has been developed for the dynamic modelling of (bio) molecules …

Two-dimensional nuclear Overhauser effect in biomolecules

A Kumar - Proceedings of the Indian Academy of Sciences …, 1985 - Springer
During the last 5 years, since its first application to biomolecules, two-dimensional nuclear
Overhauser effect (2D NOE) has become an extremely powerful technique for assignment of …

A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G

AM Gronenborn, DR Filpula, NZ Essig, A Achari… - Science, 1991 - science.org
The high-resolution three-dimensional structure of a single immunoglobulin binding domain
(B1, which comprises 56 residues including the NH2-terminal Met) of protein G from group G …

Three-dimensional solution structure of a single zinc finger DNA-binding domain

MS Lee, GP Gippert, KV Soman, DA Case, PE Wright - Science, 1989 - science.org
The three-dimensional solution structure of a zinc finger nucleic acid binding motif has been
determined by nuclear magnetic resonance (NMR) spectroscopy. Spectra of a synthetic …

Solution conformation of proteinase inhibitor IIA from bull seminal plasma by 1H nuclear magnetic resonance and distance geometry

MP Williamson, TF Havel, K Wüthrich - Journal of molecular biology, 1985 - Elsevier
A determination of the solution conformation of the proteinase inhibitor IIA from bull seminal
plasma (BUSI IIA) is described. Two-dimensional nuclear Overhauser enhancement …

Determining the architectures of macromolecular assemblies

F Alber, S Dokudovskaya, LM Veenhoff, W Zhang… - Nature, 2007 - nature.com
To understand the workings of a living cell, we need to know the architectures of its
macromolecular assemblies. Here we show how proteomic data can be used to determine …