A roadmap for multi-omics data integration using deep learning

M Kang, E Ko, TB Mersha - Briefings in Bioinformatics, 2022 - academic.oup.com
High-throughput next-generation sequencing now makes it possible to generate a vast
amount of multi-omics data for various applications. These data have revolutionized …

Deep learning for survival analysis: a review

S Wiegrebe, P Kopper, R Sonabend, B Bischl… - Artificial Intelligence …, 2024 - Springer
The influx of deep learning (DL) techniques into the field of survival analysis in recent years
has led to substantial methodological progress; for instance, learning from unstructured or …

[HTML][HTML] Integration of deep learning-based image analysis and genomic data in cancer pathology: A systematic review

L Schneider, S Laiouar-Pedari, S Kuntz… - European journal of …, 2022 - Elsevier
Background Over the past decade, the development of molecular high-throughput methods
(omics) increased rapidly and provided new insights for cancer research. In parallel, deep …

Deep-learning-based prediction of late age-related macular degeneration progression

Q Yan, DE Weeks, H Xin, A Swaroop… - Nature machine …, 2020 - nature.com
Both genetic and environmental factors influence the etiology of age-related macular
degeneration (AMD), a leading cause of blindness. AMD severity is primarily measured by …

Emerging applications of machine learning in genomic medicine and healthcare

N Chafai, L Bonizzi, S Botti… - Critical Reviews in Clinical …, 2024 - Taylor & Francis
The integration of artificial intelligence technologies has propelled the progress of clinical
and genomic medicine in recent years. The significant increase in computing power has …

HFBSurv: hierarchical multimodal fusion with factorized bilinear models for cancer survival prediction

R Li, X Wu, A Li, M Wang - Bioinformatics, 2022 - academic.oup.com
Motivation Cancer survival prediction can greatly assist clinicians in planning patient
treatments and improving their life quality. Recent evidence suggests the fusion of …

A convolutional neural network model for survival prediction based on prognosis-related cascaded Wx feature selection

Q Yin, W Chen, C Zhang, Z Wei - Laboratory Investigation, 2022 - nature.com
Great advances in deep learning have provided effective solutions for prediction tasks in the
biomedical field. However, accurate prognosis prediction using cancer genomics data …

PAGE-Net: interpretable and integrative deep learning for survival analysis using histopathological images and genomic data

J Hao, SC Kosaraju, NZ Tsaku, DH Song… - Pacific Symposium on …, 2019 - World Scientific
The integration of multi-modal data, such as histopathological images and genomic data, is
essential for understanding cancer heterogeneity and complexity for personalized …

Interpretable deep neural network for cancer survival analysis by integrating genomic and clinical data

J Hao, Y Kim, T Mallavarapu, JH Oh, M Kang - BMC medical genomics, 2019 - Springer
Background Understanding the complex biological mechanisms of cancer patient survival
using genomic and clinical data is vital, not only to develop new treatments for patients, but …

Genome‐wide association study‐based deep learning for survival prediction

T Sun, Y Wei, W Chen, Y Ding - Statistics in medicine, 2020 - Wiley Online Library
Informative and accurate survival prediction with individualized dynamic risk profiles over
time is critical for personalized disease prevention and clinical management. The massive …