[HTML][HTML] A review: Deep learning for medical image segmentation using multi-modality fusion
Multi-modality is widely used in medical imaging, because it can provide multiinformation
about a target (tumor, organ or tissue). Segmentation using multimodality consists of fusing …
about a target (tumor, organ or tissue). Segmentation using multimodality consists of fusing …
Cellular-resolution connectomics: challenges of dense neural circuit reconstruction
M Helmstaedter - Nature methods, 2013 - nature.com
Neuronal networks are high-dimensional graphs that are packed into three-dimensional
nervous tissue at extremely high density. Comprehensively mapping these networks is …
nervous tissue at extremely high density. Comprehensively mapping these networks is …
[HTML][HTML] Saturated reconstruction of a volume of neocortex
We describe automated technologies to probe the structure of neural tissue at nanometer
resolution and use them to generate a saturated reconstruction of a sub-volume of mouse …
resolution and use them to generate a saturated reconstruction of a sub-volume of mouse …
Quantitative neuroanatomy for connectomics in Drosophila
CM Schneider-Mizell, S Gerhard, M Longair… - Elife, 2016 - elifesciences.org
Neuronal circuit mapping using electron microscopy demands laborious proofreading or
reconciliation of multiple independent reconstructions. Here, we describe new methods to …
reconciliation of multiple independent reconstructions. Here, we describe new methods to …
Adaptive template transformer for mitochondria segmentation in electron microscopy images
Mitochondria, as tiny structures within the cell, are of significant importance to study cell
functions for biological and clinical analysis. And exploring how to automatically segment …
functions for biological and clinical analysis. And exploring how to automatically segment …
Mitoem dataset: Large-scale 3d mitochondria instance segmentation from em images
Electron microscopy (EM) allows the identification of intracellular organelles such as
mitochondria, providing insights for clinical and scientific studies. However, public …
mitochondria, providing insights for clinical and scientific studies. However, public …
Supervoxel-based segmentation of mitochondria in em image stacks with learned shape features
It is becoming increasingly clear that mitochondria play an important role in neural function.
Recent studies show mitochondrial morphology to be crucial to cellular physiology and …
Recent studies show mitochondrial morphology to be crucial to cellular physiology and …
Automated long-term recording and analysis of neural activity in behaving animals
Addressing how neural circuits underlie behavior is routinely done by measuring electrical
activity from single neurons in experimental sessions. While such recordings yield …
activity from single neurons in experimental sessions. While such recordings yield …
SegEM: efficient image analysis for high-resolution connectomics
Progress in electron microscopy-based high-resolution connectomics is limited by data
analysis throughput. Here, we present SegEM, a toolset for efficient semi-automated …
analysis throughput. Here, we present SegEM, a toolset for efficient semi-automated …
Machine learning of hierarchical clustering to segment 2D and 3D images
We aim to improve segmentation through the use of machine learning tools during region
agglomeration. We propose an active learning approach for performing hierarchical …
agglomeration. We propose an active learning approach for performing hierarchical …