[HTML][HTML] A review: Deep learning for medical image segmentation using multi-modality fusion

T Zhou, S Ruan, S Canu - Array, 2019 - Elsevier
Multi-modality is widely used in medical imaging, because it can provide multiinformation
about a target (tumor, organ or tissue). Segmentation using multimodality consists of fusing …

Cellular-resolution connectomics: challenges of dense neural circuit reconstruction

M Helmstaedter - Nature methods, 2013 - nature.com
Neuronal networks are high-dimensional graphs that are packed into three-dimensional
nervous tissue at extremely high density. Comprehensively mapping these networks is …

[HTML][HTML] Saturated reconstruction of a volume of neocortex

N Kasthuri, KJ Hayworth, DR Berger, RL Schalek… - Cell, 2015 - cell.com
We describe automated technologies to probe the structure of neural tissue at nanometer
resolution and use them to generate a saturated reconstruction of a sub-volume of mouse …

Quantitative neuroanatomy for connectomics in Drosophila

CM Schneider-Mizell, S Gerhard, M Longair… - Elife, 2016 - elifesciences.org
Neuronal circuit mapping using electron microscopy demands laborious proofreading or
reconciliation of multiple independent reconstructions. Here, we describe new methods to …

Adaptive template transformer for mitochondria segmentation in electron microscopy images

Y Pan, N Luo, R Sun, M Meng… - Proceedings of the …, 2023 - openaccess.thecvf.com
Mitochondria, as tiny structures within the cell, are of significant importance to study cell
functions for biological and clinical analysis. And exploring how to automatically segment …

Mitoem dataset: Large-scale 3d mitochondria instance segmentation from em images

D Wei, Z Lin, D Franco-Barranco, N Wendt… - … Conference on Medical …, 2020 - Springer
Electron microscopy (EM) allows the identification of intracellular organelles such as
mitochondria, providing insights for clinical and scientific studies. However, public …

Supervoxel-based segmentation of mitochondria in em image stacks with learned shape features

A Lucchi, K Smith, R Achanta, G Knott… - IEEE transactions on …, 2011 - ieeexplore.ieee.org
It is becoming increasingly clear that mitochondria play an important role in neural function.
Recent studies show mitochondrial morphology to be crucial to cellular physiology and …

Automated long-term recording and analysis of neural activity in behaving animals

AK Dhawale, R Poddar, SBE Wolff, VA Normand… - Elife, 2017 - elifesciences.org
Addressing how neural circuits underlie behavior is routinely done by measuring electrical
activity from single neurons in experimental sessions. While such recordings yield …

SegEM: efficient image analysis for high-resolution connectomics

M Berning, KM Boergens, M Helmstaedter - Neuron, 2015 - cell.com
Progress in electron microscopy-based high-resolution connectomics is limited by data
analysis throughput. Here, we present SegEM, a toolset for efficient semi-automated …

Machine learning of hierarchical clustering to segment 2D and 3D images

J Nunez-Iglesias, R Kennedy, T Parag, J Shi… - PloS one, 2013 - journals.plos.org
We aim to improve segmentation through the use of machine learning tools during region
agglomeration. We propose an active learning approach for performing hierarchical …