Morphogen gradients: from generation to interpretation

KW Rogers, AF Schier - Annual review of cell and …, 2011 - annualreviews.org
Morphogens are long-range signaling molecules that pattern developing tissues in a
concentration-dependent manner. The graded activity of morphogens within tissues …

Morphogen transport

P Müller, KW Rogers, SR Yu, M Brand… - …, 2013 - journals.biologists.com
The graded distribution of morphogens underlies many of the tissue patterns that form
during development. How morphogens disperse from a localized source and how gradients …

Quantitative imaging of transcription in living Drosophila embryos links polymerase activity to patterning

HG Garcia, M Tikhonov, A Lin, T Gregor - Current biology, 2013 - cell.com
Spatiotemporal patterns of gene expression are fundamental to every developmental
program. The resulting macroscopic domains have been mainly characterized by their levels …

[HTML][HTML] Precise developmental gene expression arises from globally stochastic transcriptional activity

SC Little, M Tikhonov, T Gregor - Cell, 2013 - cell.com
Early embryonic patterning events are strikingly precise, a fact that appears incompatible
with the stochastic gene expression observed across phyla. Using single-molecule mRNA …

Dense Bicoid hubs accentuate binding along the morphogen gradient

M Mir, A Reimer, JE Haines, XY Li… - Genes & …, 2017 - genesdev.cshlp.org
Morphogen gradients direct the spatial patterning of developing embryos; however, the
mechanisms by which these gradients are interpreted remain elusive. Here we used lattice …

The gap gene network

J Jaeger - Cellular and Molecular Life Sciences, 2011 - Springer
Gap genes are involved in segment determination during the early development of the fruit
fly Drosophila melanogaster as well as in other insects. This review attempts to synthesize …

Live imaging of bicoid-dependent transcription in Drosophila embryos

T Lucas, T Ferraro, B Roelens, JDLH Chanes… - Current biology, 2013 - cell.com
The early Drosophila embryo is an ideal model to understand the transcriptional regulation
of well-defined patterns of gene expression in a developing organism [1]. In this system …

The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized mRNA

SC Little, G Tkačik, TB Kneeland, EF Wieschaus… - PLoS …, 2011 - journals.plos.org
The Bicoid morphogen gradient directs the patterning of cell fates along the anterior-
posterior axis of the syncytial Drosophila embryo and serves as a paradigm of morphogen …

Modulation of the promoter activation rate dictates the transcriptional response to graded BMP signaling levels in the Drosophila embryo

C Hoppe, JR Bowles, TG Minchington, C Sutcliffe… - Developmental cell, 2020 - cell.com
Morphogen gradients specify cell fates during development, with a classic example being
the bone morphogenetic protein (BMP) gradient's conserved role in embryonic dorsal …

Combining protein and mRNA quantification to decipher transcriptional regulation

H Xu, LA Sepúlveda, L Figard, AM Sokac, I Golding - Nature methods, 2015 - nature.com
We combine immunofluorescence and single-molecule fluorescence in situ hybridization
(smFISH), followed by automated image analysis, to quantify the concentration of nuclear …