Strategies to overcome the challenges of low or no expression of heterologous proteins in Escherichia coli

R Jiang, S Yuan, Y Zhou, Y Wei, F Li, M Wang… - Biotechnology …, 2024 - Elsevier
Protein expression is a critical process in diverse biological systems. For Escherichia coli, a
widely employed microbial host in industrial catalysis and healthcare, researchers often face …

Codon influence on protein expression in E. coli correlates with mRNA levels

G Boël, R Letso, H Neely, WN Price, KH Wong, M Su… - Nature, 2016 - nature.com
Degeneracy in the genetic code, which enables a single protein to be encoded by a
multitude of synonymous gene sequences, has an important role in regulating protein …

SoluProt: prediction of soluble protein expression in Escherichia coli

J Hon, M Marusiak, T Martinek, A Kunka… - …, 2021 - academic.oup.com
Motivation Poor protein solubility hinders the production of many therapeutic and industrially
useful proteins. Experimental efforts to increase solubility are plagued by low success rates …

Exploring the relationships between protein sequence, structure and solubility

K Trainor, A Broom, EM Meiering - Current opinion in structural biology, 2017 - Elsevier
Aggregation can be thought of as a form of protein folding in which intermolecular
associations lead to the formation of large, insoluble assemblies. Various types of …

Computational design of stable and soluble biocatalysts

M Musil, H Konegger, J Hon, D Bednar… - Acs Catalysis, 2018 - ACS Publications
Natural enzymes are delicate biomolecules possessing only marginal thermodynamic
stability. Poorly stable, misfolded, and aggregated proteins lead to huge economic losses in …

DSResSol: A sequence-based solubility predictor created with Dilated Squeeze Excitation Residual Networks

M Madani, K Lin, A Tarakanova - International Journal of Molecular …, 2021 - mdpi.com
Protein solubility is an important thermodynamic parameter that is critical for the
characterization of a protein's function, and a key determinant for the production yield of a …

NetSolP: predicting protein solubility in Escherichia coli using language models

V Thumuluri, HM Martiny, JJ Almagro Armenteros… - …, 2022 - academic.oup.com
Motivation Solubility and expression levels of proteins can be a limiting factor for large-scale
studies and industrial production. By determining the solubility and expression directly from …

Protsolm: Protein solubility prediction with multi-modal features

Y Tan, J Zheng, L Hong, B Zhou - arXiv preprint arXiv:2406.19744, 2024 - arxiv.org
Understanding protein solubility is essential for their functional applications. Computational
methods for predicting protein solubility are crucial for reducing experimental costs and …

Soft matter perspective on protein crystal assembly

D Fusco, P Charbonneau - Colloids and Surfaces B: Biointerfaces, 2016 - Elsevier
Crystallography may be the gold standard of protein structure determination, but obtaining
the necessary high-quality crystals is also in some ways akin to prospecting for the precious …

[HTML][HTML] MPEPE, a predictive approach to improve protein expression in E. coli based on deep learning

Z Ding, F Guan, G Xu, Y Wang, Y Yan, W Zhang… - Computational and …, 2022 - Elsevier
The expression of proteins in Escherichia coli is often essential for their characterization,
modification, and subsequent application. Gene sequence is the major factor contributing …