The complex biology of human cytomegalovirus latency

F Goodrum - Advances in virus research, 2022 - Elsevier
While many viral infections are limited and eventually resolved by the host immune
response or by death of the host, other viruses establish long-term relationships with the …

Systematic strategies for developing phage resistant Escherichia coli strains

X Zou, X Xiao, Z Mo, Y Ge, X Jiang, R Huang… - Nature …, 2022 - nature.com
Phages are regarded as powerful antagonists of bacteria, especially in industrial
fermentation processes involving bacteria. While bacteria have developed various defense …

High-resolution studies of lysis–lysogeny decision-making in bacteriophage lambda

Q Shao, JT Trinh, L Zeng - Journal of Biological Chemistry, 2019 - ASBMB
Cellular decision-making guides complex development such as cell differentiation and
disease progression. Much of our knowledge about decision-making is derived from simple …

Engineering AraC to make it responsive to light instead of arabinose

E Romano, A Baumschlager, EB Akmeric… - Nature chemical …, 2021 - nature.com
The l-arabinose-responsive AraC and its cognate PBAD promoter underlie one of the most
often used chemically inducible prokaryotic gene expression systems in microbiology and …

Viruses as Living Systems—A Metacybernetic View

M Yolles, R Frieden - Systems, 2022 - mdpi.com
The debate over whether viruses are living organisms tends to be paradigmatically
determined. The metabolic paradigm denies that they are, while new research evidences …

A synthetic circuit for buffering gene dosage variation between individual mammalian cells

J Yang, J Lee, MA Land, S Lai, OA Igoshin… - Nature …, 2021 - nature.com
Precise control of gene expression is critical for biological research and biotechnology.
However, transient plasmid transfections in mammalian cells produce a wide distribution of …

Emerging heterogeneous compartments by viruses in single bacterial cells

JT Trinh, Q Shao, J Guan, L Zeng - Nature Communications, 2020 - nature.com
Spatial organization of biological processes allows for variability in molecular outcomes and
coordinated development. Here, we investigate how organization underpins phage lambda …

Bacteriophage self-counting in the presence of viral replication

T Yao, S Coleman, TVP Nguyen… - Proceedings of the …, 2021 - National Acad Sciences
When host cells are in low abundance, temperate bacteriophages opt for dormant
(lysogenic) infection. Phage lambda implements this strategy by increasing the frequency of …

Fine-tuned spatiotemporal dynamics of DNA replication during phage lambda infection

Z Yu, J Guan, C Hanson, T Duong, L Zeng - Journal of Virology, 2024 - journals.asm.org
After the ejection of viral DNA into the host cytoplasm, the temperate bacteriophage (phage)
lambda integrates a cascade of expressions from various regulatory genes, coupled with …

Interactions between viral regulatory proteins ensure an MOI-independent probability of lysogeny during infection by bacteriophage P1

K Zhang, K Pankratz, H Duong, M Theodore, J Guan… - Mbio, 2021 - Am Soc Microbiol
Phage P1 is a temperate phage which makes the lytic or lysogenic decision upon infecting
bacteria. During the lytic cycle, progeny phages are produced and the cell lyses, and in the …