Down syndrome: an insight of the disease

A Asim, A Kumar, S Muthuswamy, S Jain… - Journal of biomedical …, 2015 - Springer
Down syndrome (DS) is one of the commonest disorders with huge medical and social cost.
DS is associated with number of phenotypes including congenital heart defects, leukemia …

Genome structural variation discovery and genotyping

C Alkan, BP Coe, EE Eichler - Nature reviews genetics, 2011 - nature.com
Comparisons of human genomes show that more base pairs are altered as a result of
structural variation—including copy number variation—than as a result of point mutations …

Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives

M Zhao, Q Wang, Q Wang, P Jia, Z Zhao - BMC bioinformatics, 2013 - Springer
Copy number variation (CNV) is a prevalent form of critical genetic variation that leads to an
abnormal number of copies of large genomic regions in a cell. Microarray-based …

Prenatal diagnosis by chromosomal microarray analysis

B Levy, R Wapner - Fertility and sterility, 2018 - Elsevier
Chromosomal microarray analysis (CMA) is performed either by array comparative genomic
hybridization or by using a single nucleotide polymorphism array. In the prenatal setting …

DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the …

I Scheinin, D Sie, H Bengtsson… - Genome …, 2014 - genome.cshlp.org
Detection of DNA copy number aberrations by shallow whole-genome sequencing (WGS)
faces many challenges, including lack of completion and errors in the human reference …

[PDF][PDF] A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes

RM Neve, K Chin, J Fridlyand, J Yeh, FL Baehner… - Cancer cell, 2006 - cell.com
Recent studies suggest that thousands of genes may contribute to breast cancer
pathophysiologies when deregulated by genomic or epigenomic events. Here, we describe …

[图书][B] Bioinformatics and computational biology solutions using R and Bioconductor

R Gentleman, V Carey, W Huber, R Irizarry, S Dudoit - 2005 - books.google.com
Bioconductor is a widely used open source and open development software project for the
analysis and comprehension of data arising from high-throughput experimentation in …

Gastric cancer

HH Hartgrink, EPM Jansen, NCT van Grieken… - The Lancet, 2009 - thelancet.com
Gastric cancer is the second most frequent cause of cancer death worldwide, although much
geographical variation in incidence exists. Prevention and personalised treatment are …

[HTML][HTML] Distinct sets of genetic alterations in melanoma

JA Curtin, J Fridlyand, T Kageshita… - … England Journal of …, 2005 - Mass Medical Soc
Background Exposure to ultraviolet light is a major causative factor in melanoma, although
the relationship between risk and exposure is complex. We hypothesized that the clinical …

Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification

JP Schouten, CJ McElgunn, R Waaijer… - Nucleic acids …, 2002 - academic.oup.com
We describe a new method for relative quantification of 40 different DNA sequences in an
easy to perform reaction requiring only 20 ng of human DNA. Applications shown of this …