RNA-binding proteins in tumor progression

H Qin, H Ni, Y Liu, Y Yuan, T Xi, X Li… - Journal of hematology & …, 2020 - Springer
RNA-binding protein (RBP) has a highly dynamic spatiotemporal regulation process and
important biological functions. They are critical to maintain the transcriptome through post …

The nexus between RNA-binding proteins and their effectors

S He, E Valkov, S Cheloufi, J Murn - Nature Reviews Genetics, 2023 - nature.com
RNA-binding proteins (RBPs) regulate essentially every event in the lifetime of an RNA
molecule, from its production to its destruction. Whereas much has been learned about RNA …

[HTML][HTML] Enhancer RNA m6A methylation facilitates transcriptional condensate formation and gene activation

JH Lee, R Wang, F Xiong, J Krakowiak, Z Liao… - Molecular cell, 2021 - cell.com
The mechanistic understanding of nascent RNAs in transcriptional control remains limited.
Here, by a high sensitivity method methylation-inscribed nascent transcripts sequencing …

G-quadruplexes are transcription factor binding hubs in human chromatin

J Spiegel, SM Cuesta, S Adhikari, R Hänsel-Hertsch… - Genome biology, 2021 - Springer
Background The binding of transcription factors (TF) to genomic targets is critical in the
regulation of gene expression. Short, double-stranded DNA sequence motifs are routinely …

Phase separation of RNA-binding protein promotes polymerase binding and transcription

W Shao, X Bi, Y Pan, B Gao, J Wu, Y Yin, Z Liu… - Nature Chemical …, 2022 - nature.com
An RNA-involved phase-separation model has been proposed for transcription control.
However, the molecular links that connect RNA to the transcription machinery remain …

RNA interactions are essential for CTCF-mediated genome organization

R Saldaña-Meyer, J Rodriguez-Hernaez, T Escobar… - Molecular cell, 2019 - cell.com
The function of the CCCTC-binding factor (CTCF) in the organization of the genome has
become an important area of investigation, but the mechanisms by which CTCF dynamically …

Chemical profiling of DNA G-quadruplex-interacting proteins in live cells

X Zhang, J Spiegel, S Martínez Cuesta, S Adhikari… - Nature Chemistry, 2021 - nature.com
DNA–protein interactions regulate critical biological processes. Identifying proteins that bind
to specific, functional genomic loci is essential to understand the underlying regulatory …

RBP–RNA interactions in the control of autoimmunity and autoinflammation

J Liu, X Cao - Cell research, 2023 - nature.com
Autoimmunity and autoinflammation arise from aberrant immunological and inflammatory
responses toward self-components, contributing to various autoimmune diseases and …

[HTML][HTML] Effective tools for RNA-derived therapeutics: siRNA interference or miRNA mimicry

P Wang, Y Zhou, AM Richards - Theranostics, 2021 - ncbi.nlm.nih.gov
The approval of the first small interfering RNA (siRNA) drug Patisiran by FDA in 2018 marks
a new era of RNA interference (RNAi) therapeutics. MicroRNAs (miRNA), an important post …

[HTML][HTML] Mechanisms of interplay between transcription factors and the 3D genome

S Kim, J Shendure - Molecular cell, 2019 - cell.com
Transcription factors (TFs) bind DNA in a sequence-specific manner and thereby serve as
the protein anchors and determinants of 3D genome organization. Conversely, chromatin …