Network motifs: theory and experimental approaches

U Alon - Nature Reviews Genetics, 2007 - nature.com
Transcription regulation networks control the expression of genes. The transcription
networks of well-studied microorganisms appear to be made up of a small set of recurring …

Graph-based network analysis of resting-state functional MRI

J Wang, X Zuo, Y He - Frontiers in systems neuroscience, 2010 - frontiersin.org
In the past decade, resting-state functional MRI (R-fMRI) measures of brain activity have
attracted considerable attention. Based on changes in the blood oxygen level-dependent …

[图书][B] An introduction to systems biology: design principles of biological circuits

U Alon - 2019 - api.taylorfrancis.com
Praise for the first edition:… superb, beautifully written and organized work that takes an
engineering approach to systems biology. Alon provides nicely written appendices to …

Hierarchical organization of human cortical networks in health and schizophrenia

DS Bassett, E Bullmore, BA Verchinski… - Journal of …, 2008 - Soc Neuroscience
The complex organization of connectivity in the human brain is incompletely understood.
Recently, topological measures based on graph theory have provided a new approach to …

Conserved and variable architecture of human white matter connectivity

DS Bassett, JA Brown, V Deshpande, JM Carlson… - Neuroimage, 2011 - Elsevier
Whole-brain network analysis of diffusion imaging tractography data is an important new tool
for quantification of differential connectivity patterns across individuals and between groups …

Multilayer motif analysis of brain networks

F Battiston, V Nicosia, M Chavez… - Chaos: An Interdisciplinary …, 2017 - pubs.aip.org
In the last decade, network science has shed new light both on the structural (anatomical)
and on the functional (correlations in the activity) connectivity among the different areas of …

Stimulus type shapes the topology of cellular functional networks in mouse visual cortex

D Tang, J Zylberberg, X Jia, H Choi - Nature Communications, 2024 - nature.com
On the timescale of sensory processing, neuronal networks have relatively fixed anatomical
connectivity, while functional interactions between neurons can vary depending on the …

PANET: a GPU-based tool for fast parallel analysis of robustness dynamics and feed-forward/feedback loop structures in large-scale biological networks

HC Trinh, DH Le, YK Kwon - PloS one, 2014 - journals.plos.org
It has been a challenge in systems biology to unravel relationships between structural
properties and dynamic behaviors of biological networks. A Cytoscape plugin named NetDS …

Network motifs in cellular neurophysiology

D Mittal, R Narayanan - Trends in Neurosciences, 2024 - cell.com
Abstract Concepts from network science and graph theory, including the framework of
network motifs, have been frequently applied in studying neuronal networks and other …

The brain connectivity workshops: moving the frontiers of computational systems neuroscience

KE Stephan, JJ Riera, G Deco, B Horwitz - Neuroimage, 2008 - Elsevier
Understanding the link between neurobiology and cognition requires that neuroscience
moves beyond mere structure–function correlations. An explicit systems perspective is …