Previously, large-scale proteomics was possible only for organisms whose genomes were
sequenced, meaning the most common model organisms. The use of next-generation …

Translation initiation is a crucial step of protein synthesis which largely defines how the
composition of the cellular transcriptome is converted to the proteome and controls the …

Previous bioinformatic analyses of metagenomic data have indicated that bacteriophages
can use genetic codes different from those of their host bacteria. In particular, reassignment …

Proteogenomics has emerged as a field at the junction of genomics and proteomics. It is a
loose collection of technologies that allow the search of tandem mass spectra against …

In terms of lifestyle, free-living bacteria are classified as either oligotrophic/specialist or
opportunist/generalist. Heterogeneous marine environments such as coastal waters favour …

The term 'exoproteome'describes the protein content that can be found in the extracellular
proximity of a given biological system. These proteins arise from cellular secretion, other …

Sampling small amounts of biofilm from harsh environments such as the biofilm present on
the walls of a radioactive material storage pool offers few analytical options if taxonomic …

Proteogenomics has the potential to advance genome annotation through high quality
peptide identifications derived from mass spectrometry experiments, which demonstrate a …

High‐throughput identification of proteins with the latest generation of hybrid high‐resolution
mass spectrometers is opening new perspectives in microbiology. I present, here, an …

The colonic epithelial surface is protected by an inner mucus layer that the commensal
microflora cannot penetrate. We previously demonstrated that Entamoeba histolytica …