Methodology of fish eDNA and its applications in ecology and environment
S Wang, Z Yan, B Hänfling, X Zheng, P Wang… - Science of the Total …, 2021 - Elsevier
Fish environmental DNA (eDNA) studies have made substantial progress during the past
decade, and significant advances in monitoring fishes have been gained by taking …
decade, and significant advances in monitoring fishes have been gained by taking …
Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis
TM Porter, M Hajibabaei - Molecular ecology, 2018 - Wiley Online Library
The purpose of this review is to present the most common and emerging DNA‐based
methods used to generate data for biodiversity and biomonitoring studies. As environmental …
methods used to generate data for biodiversity and biomonitoring studies. As environmental …
[图书][B] Environmental DNA: For biodiversity research and monitoring
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
[HTML][HTML] Estimating and mitigating amplification bias in qualitative and quantitative arthropod metabarcoding
Amplicon based metabarcoding promises rapid and cost-efficient analyses of species
composition. However, it is disputed whether abundance estimates can be derived from …
composition. However, it is disputed whether abundance estimates can be derived from …
Why we need sustainable networks bridging countries, disciplines, cultures and generations for aquatic biomonitoring 2.0: a perspective derived from the DNAqua-Net …
Aquatic biomonitoring has become an essential task in Europe and many other regions as a
consequence of strong anthropogenic pressures affecting the health of lakes, rivers, oceans …
consequence of strong anthropogenic pressures affecting the health of lakes, rivers, oceans …
[HTML][HTML] Automated high throughput animal CO1 metabarcode classification
TM Porter, M Hajibabaei - Scientific Reports, 2018 - nature.com
We introduce a method for assigning names to CO1 metabarcode sequences with
confidence scores in a rapid, high-throughput manner. We compiled nearly 1 million CO1 …
confidence scores in a rapid, high-throughput manner. We compiled nearly 1 million CO1 …
Comparing diversity levels in environmental samples: DNA sequence capture and metabarcoding approaches using 18S and COI genes
H Giebner, K Langen, SJ Bourlat… - Molecular Ecology …, 2020 - Wiley Online Library
Environmental DNA studies targeting multiple taxa using metabarcoding provide remarkable
insights into levels of species diversity in any habitat. The main drawbacks are the presence …
insights into levels of species diversity in any habitat. The main drawbacks are the presence …
[HTML][HTML] Putting COI metabarcoding in context: The utility of exact sequence variants (ESVs) in biodiversity analysis
TM Porter, M Hajibabaei - Frontiers in Ecology and Evolution, 2020 - frontiersin.org
DNA barcoding and metabarcoding are techniques that focus on signature genomic regions
that in theory provide species level resolution, but in practice this is not always possible. We …
that in theory provide species level resolution, but in practice this is not always possible. We …
[HTML][HTML] High-throughput sequencing for community analysis: the promise of DNA barcoding to uncover diversity, relatedness, abundances and interactions in spider …
Large-scale studies on community ecology are highly desirable but often difficult to
accomplish due to the considerable investment of time, labor and, money required to …
accomplish due to the considerable investment of time, labor and, money required to …
Terrestrial mammal surveillance using hybridization capture of environmental DNA from African waterholes
Determining species distributions can be extremely challenging but is crucial to ecological
and conservation research. Environmental DNA (eDNA) approaches have shown particular …
and conservation research. Environmental DNA (eDNA) approaches have shown particular …