RADseq approaches and applications for forest tree genetics

TL Parchman, JP Jahner, KA Uckele… - Tree Genetics & …, 2018 - Springer
As tree species vary extensively in genome size, complexity, and resource development,
reduced representation methods have been increasingly employed for the generation of …

A key metabolic gene for recurrent freshwater colonization and radiation in fishes

A Ishikawa, N Kabeya, K Ikeya, R Kakioka, JN Cech… - Science, 2019 - science.org
Colonization of new ecological niches has triggered large adaptive radiations. Although
some lineages have made use of such opportunities, not all do so. The factors causing this …

[HTML][HTML] Genome sequence and analysis of the Japanese morning glory Ipomoea nil

A Hoshino, V Jayakumar, E Nitasaka, A Toyoda… - Nature …, 2016 - nature.com
Ipomoea is the largest genus in the family Convolvulaceae. Ipomoea nil (Japanese morning
glory) has been utilized as a model plant to study the genetic basis of floricultural traits, with …

[HTML][HTML] Genome editing reveals fitness effects of a gene for sexual dichromatism in Sulawesian fishes

S Ansai, K Mochida, S Fujimoto… - Nature …, 2021 - nature.com
Sexual selection drives rapid phenotypic diversification of mating traits. However, we know
little about the causative genes underlying divergence in sexually selected traits. Here, we …

[HTML][HTML] Association analysis of production traits of Japanese quail (Coturnix japonica) using restriction-site associated DNA sequencing

MI Haqani, M Nakano, AJ Nagano, Y Nakamura… - Scientific Reports, 2023 - nature.com
This study was designed to perform an association analysis and identify SNP markers
associated with production traits of Japanese quail using restriction-site-associated DNA …

Mutation in the putative ketoacyl-ACP reductase CaKR1 induces loss of pungency in Capsicum

S Koeda, K Sato, H Saito, AJ Nagano, M Yasugi… - Theoretical and Applied …, 2019 - Springer
Key message A putative ketoacyl-ACP reductase (CaKR1) that was not previously known to
be associated with pungency of Capsicum was identified from map-based cloning and …

[HTML][HTML] RAD-Seq analysis of wild Japanese garlic (Allium macrostemon Bunge) growing in Japan revealed that this neglected crop was previously actively utilized

W Probowati, S Koga, K Harada, Y Nagano… - Scientific Reports, 2023 - nature.com
Allium macrostemon Bunge, commonly referred to as" no-biru" in Japan, is a widespread
wild onion species found across the country. Despite being deeply entwined in ancient …

[HTML][HTML] Genetic diversity of loquat (Eriobotrya japonica) revealed using RAD-Seq SNP markers

Y Nagano, H Tashiro, S Nishi, N Hiehata… - Scientific Reports, 2022 - nature.com
Loquat (Eriobotrya japonica) have originated in southeastern China and spread as a
cultivated plant worldwide. Many of the loquat genetic resources collected internationally are …

[HTML][HTML] Domesticating Vigna stipulacea: Chromosome-Level genome assembly reveals VsPSAT1 as a candidate gene decreasing hard-seededness

Y Takahashi, H Sakai, H Ariga, S Teramoto… - Frontiers in Plant …, 2023 - frontiersin.org
To increase food production under the challenges presented by global climate change, the
concept of de novo domestication—utilizing stress-tolerant wild species as new crops—has …

[HTML][HTML] RAD-seq reveals genetic structure of the F2-generation of natural willow hybrids (Salix L.) and a great potential for interspecific introgression

S Gramlich, ND Wagner, E Hörandl - BMC Plant Biology, 2018 - Springer
Background Hybridization of species with porous genomes can eventually lead to
introgression via repeated backcrossing. The potential for introgression between species is …