Origins of DNA replication in eukaryotes
Y Hu, B Stillman - Molecular cell, 2023 - cell.com
Errors occurring during DNA replication can result in inaccurate replication, incomplete
replication, or re-replication, resulting in genome instability that can lead to diseases such as …
replication, or re-replication, resulting in genome instability that can lead to diseases such as …
[HTML][HTML] Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project
The four-dimensional nucleome (4DN) consortium studies the architecture of the genome
and the nucleus in space and time. We summarize progress by the consortium and highlight …
and the nucleus in space and time. We summarize progress by the consortium and highlight …
Integrated spatial genomics reveals global architecture of single nuclei
Identifying the relationships between chromosome structures, nuclear bodies, chromatin
states and gene expression is an overarching goal of nuclear-organization studies …
states and gene expression is an overarching goal of nuclear-organization studies …
Control of DNA replication timing in the 3D genome
The 3D organization of mammalian chromatin was described more than 30 years ago by
visualizing sites of DNA synthesis at different times during the S phase of the cell cycle …
visualizing sites of DNA synthesis at different times during the S phase of the cell cycle …
Biological phase separation: cell biology meets biophysics
Progress in development of biophysical analytic approaches has recently crossed paths with
macromolecule condensates in cells. These cell condensates, typically termed liquid-like …
macromolecule condensates in cells. These cell condensates, typically termed liquid-like …
Replication timing maintains the global epigenetic state in human cells
The temporal order of DNA replication [replication timing (RT)] is correlated with chromatin
modifications and three-dimensional genome architecture; however, causal links have not …
modifications and three-dimensional genome architecture; however, causal links have not …
High-resolution Repli-Seq defines the temporal choreography of initiation, elongation and termination of replication in mammalian cells
PA Zhao, T Sasaki, DM Gilbert - Genome biology, 2020 - Springer
Background DNA replication in mammalian cells occurs in a defined temporal order during
S phase, known as the replication timing (RT) programme. Replication timing is …
S phase, known as the replication timing (RT) programme. Replication timing is …
Mechanisms and functions of chromosome compartmentalization
EM Hildebrand, J Dekker - Trends in biochemical sciences, 2020 - cell.com
Active and inactive chromatin are spatially separated in the nucleus. In Hi-C data, this is
reflected by the formation of compartments, whose interactions form a characteristic …
reflected by the formation of compartments, whose interactions form a characteristic …
Replication dynamics identifies the folding principles of the inactive X chromosome
R Poonperm, S Ichihara, H Miura, A Tanigawa… - Nature Structural & …, 2023 - nature.com
Chromosome-wide late replication is an enigmatic hallmark of the inactive X chromosome
(Xi). How it is established and what it represents remains obscure. By single-cell DNA …
(Xi). How it is established and what it represents remains obscure. By single-cell DNA …
Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq
Cycling cells duplicate their DNA content during S phase, following a defined program
called replication timing (RT). Early-and late-replicating regions differ in terms of mutation …
called replication timing (RT). Early-and late-replicating regions differ in terms of mutation …