[HTML][HTML] Spatial biology of cancer evolution
Z Seferbekova, A Lomakin, LR Yates… - Nature Reviews …, 2023 - nature.com
The natural history of cancers can be understood through the lens of evolution given that the
driving forces of cancer development are mutation and selection of fitter clones. Cancer …
driving forces of cancer development are mutation and selection of fitter clones. Cancer …
Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics
Single-cell transcriptomics has broadened our understanding of cellular diversity and gene
expression dynamics in healthy and diseased tissues. Recently, spatial transcriptomics has …
expression dynamics in healthy and diseased tissues. Recently, spatial transcriptomics has …
The co-evolution of the genome and epigenome in colorectal cancer
T Heide, J Househam, GD Cresswell, I Spiteri, C Lynn… - Nature, 2022 - nature.com
Colorectal malignancies are a leading cause of cancer-related death and have undergone
extensive genomic study,. However, DNA mutations alone do not fully explain malignant …
extensive genomic study,. However, DNA mutations alone do not fully explain malignant …
[HTML][HTML] Trellis tree-based analysis reveals stromal regulation of patient-derived organoid drug responses
MR Zapatero, A Tong, JW Opzoomer, R O'Sullivan… - Cell, 2023 - cell.com
Patient-derived organoids (PDOs) can model personalized therapy responses; however,
current screening technologies cannot reveal drug response mechanisms or how tumor …
current screening technologies cannot reveal drug response mechanisms or how tumor …
[HTML][HTML] Spatial transcriptomics: Technologies, applications and experimental considerations
The diverse cell types of an organ have a highly structured organization to enable their
efficient and correct function. To fully appreciate gene functions in a given cell type, one …
efficient and correct function. To fully appreciate gene functions in a given cell type, one …
The evolutionary theory of cancer: challenges and potential solutions
L Laplane, CC Maley - Nature Reviews Cancer, 2024 - nature.com
The clonal evolution model of cancer was developed in the 1950s–1970s and became
central to cancer biology in the twenty-first century, largely through studies of cancer …
central to cancer biology in the twenty-first century, largely through studies of cancer …
Defining heritability, plasticity, and transition dynamics of cellular phenotypes in somatic evolution
Single-cell sequencing has characterized cell state heterogeneity across diverse healthy
and malignant tissues. However, the plasticity or heritability of these cell states remains …
and malignant tissues. However, the plasticity or heritability of these cell states remains …
[HTML][HTML] Reactivation of embryonic genetic programs in tissue regeneration and disease
H Fazilaty, K Basler - Nature Genetics, 2023 - nature.com
Embryonic genetic programs are reactivated in response to various types of tissue damage,
providing cell plasticity for tissue regeneration or disease progression. In acute conditions …
providing cell plasticity for tissue regeneration or disease progression. In acute conditions …
State-dependent evolutionary models reveal modes of solid tumour growth
Spatial properties of tumour growth have profound implications for cancer progression,
therapeutic resistance and metastasis. Yet, how spatial position governs tumour cell division …
therapeutic resistance and metastasis. Yet, how spatial position governs tumour cell division …
Contribution of pks+E. coli mutations to colorectal carcinogenesis
B Chen, D Ramazzotti, T Heide, I Spiteri… - Nature …, 2023 - nature.com
The dominant mutational signature in colorectal cancer genomes is C> T deamination
(COSMIC Signature 1) and, in a small subgroup, mismatch repair signature (COSMIC …
(COSMIC Signature 1) and, in a small subgroup, mismatch repair signature (COSMIC …