Biochemical systems theory: a review

EO Voit - International Scholarly Research Notices, 2013 - Wiley Online Library
Biochemical systems theory (BST) is the foundation for a set of analytical andmodeling tools
that facilitate the analysis of dynamic biological systems. This paper depicts major …

Agent-based simulation for large-scale emergency response: A survey of usage and implementation

GI Hawe, G Coates, DT Wilson, RS Crouch - ACM Computing Surveys …, 2012 - dl.acm.org
When attempting to determine how to respond optimally to a large-scale emergency, the
ability to predict the consequences of certain courses of action in silico is of great utility …

A fully automated framework for control of linear systems from temporal logic specifications

M Kloetzer, C Belta - IEEE Transactions on Automatic Control, 2008 - ieeexplore.ieee.org
We consider the following problem: given a linear system and a linear temporal logic (LTL)
formula over a set of linear predicates in its state variables, find a feedback control law with …

Temporal logic control of discrete-time piecewise affine systems

B Yordanov, J Tumova, I Cerna… - IEEE Transactions on …, 2011 - ieeexplore.ieee.org
We present a computational framework for automatic synthesis of a feedback control
strategy for a discrete-time piecewise affine (PWA) system from a specification given as a …

The best models of metabolism

EO Voit - Wiley Interdisciplinary Reviews: Systems Biology and …, 2017 - Wiley Online Library
Biochemical systems are among of the oldest application areas of mathematical modeling.
Spanning a time period of over one hundred years, the repertoire of options for structuring a …

Abstract machines of systems biology

L Cardelli - Transactions on computational systems biology III, 2005 - Springer
Living cells are extremely well-organized autonomous systems, consisting of discrete
interacting components. Key to understanding and modeling their behavior is modeling their …

[PDF][PDF] A knowledge based approach for representing and reasoning about signaling networks

C Baral, K Chancellor, N Tran, NL Tran, A Joy… - …, 2004 - academia.edu
Motivation: In this paper we propose to use recent developments in knowledge
representation languages and reasoning methodologies for representing and reasoning …

Language-guided controller synthesis for linear systems

EA Gol, M Lazar, C Belta - IEEE Transactions on Automatic …, 2013 - ieeexplore.ieee.org
This paper considers the problem of controlling discrete-time linear systems from
specifications given as formulas of syntactically co-safe linear temporal logic over linear …

A fully automated framework for control of linear systems from LTL specifications

M Kloetzer, C Belta - … Workshop on Hybrid Systems: Computation and …, 2006 - Springer
We consider the following problem: given a linear system and an LTL−− X formula over a set
of linear predicates in its state variables, find a feedback control law with polyhedral bounds …

Formal analysis of discrete-time piecewise affine systems

B Yordanov, C Belta - IEEE Transactions on Automatic Control, 2010 - ieeexplore.ieee.org
In this technical note, we study temporal logic properties of trajectories of discrete-time
piecewise affine (PWA) systems. Specifically, given a PWA system and a linear temporal …