Reproducibility in science: improving the standard for basic and preclinical research
CG Begley, JPA Ioannidis - Circulation research, 2015 - Am Heart Assoc
Medical and scientific advances are predicated on new knowledge that is robust and
reliable and that serves as a solid foundation on which further advances can be built. In …
reliable and that serves as a solid foundation on which further advances can be built. In …
Supervised, unsupervised, and semi-supervised feature selection: a review on gene selection
JC Ang, A Mirzal, H Haron… - IEEE/ACM transactions …, 2015 - ieeexplore.ieee.org
Recently, feature selection and dimensionality reduction have become fundamental tools for
many data mining tasks, especially for processing high-dimensional data such as gene …
many data mining tasks, especially for processing high-dimensional data such as gene …
Comprehensive molecular characterization of papillary renal-cell carcinoma
Cancer Genome Atlas Research … - New England Journal of …, 2016 - Mass Medical Soc
Background Papillary renal-cell carcinoma, which accounts for 15 to 20% of renal-cell
carcinomas, is a heterogeneous disease that consists of various types of renal cancer …
carcinomas, is a heterogeneous disease that consists of various types of renal cancer …
A landscape of pharmacogenomic interactions in cancer
Systematic studies of cancer genomes have provided unprecedented insights into the
molecular nature of cancer. Using this information to guide the development and application …
molecular nature of cancer. Using this information to guide the development and application …
A comprehensive transcriptional portrait of human cancer cell lines
C Klijn, S Durinck, EW Stawiski, PM Haverty… - Nature …, 2015 - nature.com
Tumor-derived cell lines have served as vital models to advance our understanding of
oncogene function and therapeutic responses. Although substantial effort has been made to …
oncogene function and therapeutic responses. Although substantial effort has been made to …
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
J Barretina, G Caponigro, N Stransky, K Venkatesan… - Nature, 2012 - nature.com
The systematic translation of cancer genomic data into knowledge of tumour biology and
therapeutic possibilities remains challenging. Such efforts should be greatly aided by robust …
therapeutic possibilities remains challenging. Such efforts should be greatly aided by robust …
Cancer transcriptome profiling at the juncture of clinical translation
M Cieślik, AM Chinnaiyan - Nature Reviews Genetics, 2018 - nature.com
Methodological breakthroughs over the past four decades have repeatedly revolutionized
transcriptome profiling. Using RNA sequencing (RNA-seq), it has now become possible to …
transcriptome profiling. Using RNA sequencing (RNA-seq), it has now become possible to …
Adaptive huber regression
Big data can easily be contaminated by outliers or contain variables with heavy-tailed
distributions, which makes many conventional methods inadequate. To address this …
distributions, which makes many conventional methods inadequate. To address this …
[HTML][HTML] Revisiting global gene expression analysis
Gene expression analysis is a widely used and powerful method for investigating the
transcriptional behavior of biological systems, for classifying cell states in disease, and for …
transcriptional behavior of biological systems, for classifying cell states in disease, and for …
Tumor-derived cell lines as molecular models of cancer pharmacogenomics
Compared with normal cells, tumor cells have undergone an array of genetic and epigenetic
alterations. Often, these changes underlie cancer development, progression, and drug …
alterations. Often, these changes underlie cancer development, progression, and drug …