PubMed and beyond: biomedical literature search in the age of artificial intelligence

Q Jin, R Leaman, Z Lu - EBioMedicine, 2024 - thelancet.com
Biomedical research yields vast information, much of which is only accessible through the
literature. Consequently, literature search is crucial for healthcare and biomedicine. Recent …

Clinical interpretation of sequence variants

J Zhang, Y Yao, H He, J Shen - Current protocols in human …, 2020 - Wiley Online Library
Clinical interpretation of DNA sequence variants is a critical step in reporting clinical genetic
testing results. Application of next‐generation sequencing technology in molecular genetic …

Recent advances of automated methods for searching and extracting genomic variant information from biomedical literature

K Lee, CH Wei, Z Lu - Briefings in bioinformatics, 2021 - academic.oup.com
Motivation To obtain key information for personalized medicine and cancer research,
clinicians and researchers in the biomedical field are in great need of searching genomic …

pubmedKB: an interactive web server for exploring biomedical entity relations in the biomedical literature

PH Li, TF Chen, JY Yu, SH Shih, CH Su… - Nucleic Acids …, 2022 - academic.oup.com
With the proliferation of genomic sequence data for biomedical research, the exploration of
human genetic information by domain experts requires a comprehensive interrogation of …

[HTML][HTML] Hearing Impairment with monoallelic GJB2 variants: A GJB2 cause or non-GJB2 cause?

YH Lin, PC Wu, CY Tsai, YH Lin, MY Lo, SJ Hsu… - The Journal of Molecular …, 2021 - Elsevier
Recessive variants in GJB2 are the most common genetic cause of sensorineural hearing
impairment. However, in many patients, only one variant in the GJB2 coding region is …

Variomes: a high recall search engine to support the curation of genomic variants

E Pasche, A Mottaz, D Caucheteur, J Gobeill… - …, 2022 - academic.oup.com
Motivation Identification and interpretation of clinically actionable variants is a critical
bottleneck. Searching for evidence in the literature is mandatory according to …

GDC: An Integrated Resource to Explore the Pathogenesis of Hearing Loss through Genetics and Genomics

H Cheng, X Wang, M Zhong, J Geng, W Li, K Pei, Y Lu… - bioRxiv, 2024 - biorxiv.org
Effective research and clinical application in audiology and hearing loss (HL) often require
the integration of diverse data. However, the absence of a dedicated database impeded …

PGSbuilder: An end-to-end platform for human genome association analysis and polygenic risk score predictions

KH Lee, YL Lee, TT Hsieh, YC Chang, SS Wang… - bioRxiv, 2023 - biorxiv.org
Understanding the genetic basis of human complex diseases is increasingly important in the
development of precision medicine. Over the last decade, genome-wide association studies …