Scientific discovery in the age of artificial intelligence
Artificial intelligence (AI) is being increasingly integrated into scientific discovery to augment
and accelerate research, helping scientists to generate hypotheses, design experiments …
and accelerate research, helping scientists to generate hypotheses, design experiments …
From nature to industry: Harnessing enzymes for biocatalysis
Biocatalysis harnesses enzymes to make valuable products. This green technology is used
in countless applications from bench scale to industrial production and allows practitioners …
in countless applications from bench scale to industrial production and allows practitioners …
De novo design of protein structure and function with RFdiffusion
There has been considerable recent progress in designing new proteins using deep-
learning methods,,,,,,,–. Despite this progress, a general deep-learning framework for protein …
learning methods,,,,,,,–. Despite this progress, a general deep-learning framework for protein …
De novo design of luciferases using deep learning
De novo enzyme design has sought to introduce active sites and substrate-binding pockets
that are predicted to catalyse a reaction of interest into geometrically compatible native …
that are predicted to catalyse a reaction of interest into geometrically compatible native …
Evolutionary-scale prediction of atomic-level protein structure with a language model
Recent advances in machine learning have leveraged evolutionary information in multiple
sequence alignments to predict protein structure. We demonstrate direct inference of full …
sequence alignments to predict protein structure. We demonstrate direct inference of full …
Illuminating protein space with a programmable generative model
Three billion years of evolution has produced a tremendous diversity of protein molecules,
but the full potential of proteins is likely to be much greater. Accessing this potential has …
but the full potential of proteins is likely to be much greater. Accessing this potential has …
Generalized biomolecular modeling and design with RoseTTAFold All-Atom
Deep-learning methods have revolutionized protein structure prediction and design but are
presently limited to protein-only systems. We describe RoseTTAFold All-Atom (RFAA), which …
presently limited to protein-only systems. We describe RoseTTAFold All-Atom (RFAA), which …
Robust deep learning–based protein sequence design using ProteinMPNN
Although deep learning has revolutionized protein structure prediction, almost all
experimentally characterized de novo protein designs have been generated using …
experimentally characterized de novo protein designs have been generated using …
Broadly applicable and accurate protein design by integrating structure prediction networks and diffusion generative models
There has been considerable recent progress in designing new proteins using deep
learning methods–. Despite this progress, a general deep learning framework for protein …
learning methods–. Despite this progress, a general deep learning framework for protein …
Improving protein expression, stability, and function with ProteinMPNN
KH Sumida, R Núñez-Franco, I Kalvet… - Journal of the …, 2024 - ACS Publications
Natural proteins are highly optimized for function but are often difficult to produce at a scale
suitable for biotechnological applications due to poor expression in heterologous systems …
suitable for biotechnological applications due to poor expression in heterologous systems …